8G8G
Interaction of H3 tail in LIN28B nucleosome with Oct4
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E | Histone H3 | polymer | 135 | 15303.9 | 2 | UniProt (P84233) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | |
2 | B, F | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (P62799) Pfam (PF15511) In PDB | Xenopus laevis (African clawed frog) | |
3 | C, G | Histone H2A | polymer | 129 | 13978.2 | 2 | UniProt (Q6AZJ8) Pfam (PF00125) Pfam (PF16211) In PDB | Xenopus laevis (African clawed frog) | |
4 | D, H | Histone H2B | polymer | 122 | 13524.8 | 2 | UniProt (P02281) Pfam (PF00125) In PDB | Xenopus laevis (African clawed frog) | H2B1.1 |
5 | I | LIN28B DNA (174-MER) | polymer | 182 | 55827.7 | 1 | Homo sapiens | ||
6 | J | LIN28B DNA (174-MER) | polymer | 182 | 56519.3 | 1 | Homo sapiens | ||
7 | X | POU domain, class 5, transcription factor 1 | polymer | 395 | 42299.5 | 1 | UniProt (Q01860) Pfam (PF00157) Pfam (PF00046) In PDB | Homo sapiens (human) | Octamer-binding protein 3,Oct-3,Octamer-binding protein 4,Oct-4,Octamer-binding transcription factor 3,OTF-3 |
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
D, H: 1 - 122 (UniProt: P02281)
X: 1 - 360 (UniProt: Q01860)
PDB | External Database | Details |
---|---|---|
Ala 102 | Gly 103 | variant |
PDB | External Database | Details |
---|---|---|
Thr 29 | Ser 33 | variant |
PDB | External Database | Details |
---|---|---|
Gly -34 | - | expression tag |
Ser -33 | - | expression tag |
Ser -32 | - | expression tag |
His -31 | - | expression tag |
His -30 | - | expression tag |
His -29 | - | expression tag |
His -28 | - | expression tag |
His -27 | - | expression tag |
His -26 | - | expression tag |
Ser -25 | - | expression tag |
Ser -24 | - | expression tag |
Gly -23 | - | expression tag |
Leu -22 | - | expression tag |
Val -21 | - | expression tag |
Pro -20 | - | expression tag |
Arg -19 | - | expression tag |
Gly -18 | - | expression tag |
Ser -17 | - | expression tag |
His -16 | - | expression tag |
Met -15 | - | expression tag |
Ala -14 | - | expression tag |
Ser -13 | - | expression tag |
Met -12 | - | expression tag |
Thr -11 | - | expression tag |
Gly -10 | - | expression tag |
Gly -9 | - | expression tag |
Gln -8 | - | expression tag |
Gln -7 | - | expression tag |
Met -6 | - | expression tag |
Gly -5 | - | expression tag |
Arg -4 | - | expression tag |
Asp -3 | - | expression tag |
Pro -2 | - | expression tag |
Asn -1 | - | expression tag |
Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 11 |
Total formula weight | 262786.7 | |
All* | Total formula weight | 262786.7 |