8G88
Human Oct4 bound to nucleosome with human nMatn1 sequence
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E (A, E) | Histone H3 | polymer | 135 | 15303.9 | 2 | UniProt (P84233) Pfam (PF00125) | Xenopus laevis (African clawed frog) | |
| 2 | B, F (B, F) | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (P62799) Pfam (PF15511) | Xenopus laevis (African clawed frog) | |
| 3 | C, G (C, G) | Histone H2A | polymer | 129 | 13978.2 | 2 | UniProt (Q6AZJ8) Pfam (PF00125) Pfam (PF16211) | Xenopus laevis (African clawed frog) | |
| 4 | D, H (D, H) | Histone H2B | polymer | 122 | 13524.8 | 2 | UniProt (P02281) Pfam (PF00125) | Xenopus laevis (African clawed frog) | H2B1.1 |
| 5 | I (I) | nMATn1 DNA top strand (168-MER) | polymer | 186 | 56933.6 | 1 | Homo sapiens | ||
| 6 | J (J) | nMatn1 DNA bottom strand (168-MER) | polymer | 186 | 57889.9 | 1 | Homo sapiens | ||
| 7 | K (X) | POU domain, class 5, transcription factor 1 | polymer | 395 | 42299.5 | 1 | UniProt (Q01860) Pfam (PF00157) Pfam (PF00046) | Homo sapiens (human) | Octamer-binding protein 3,Oct-3,Octamer-binding protein 4,Oct-4,Octamer-binding transcription factor 3,OTF-3 |
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
D, H: 1 - 122 (UniProt: P02281)
X: 1 - 360 (UniProt: Q01860)
| PDB | External Database | Details |
|---|---|---|
| Ala 102 | Gly 103 | variant |
| PDB | External Database | Details |
|---|---|---|
| Thr 29 | Ser 33 | variant |
| PDB | External Database | Details |
|---|---|---|
| Gly -34 | - | expression tag |
| Ser -33 | - | expression tag |
| Ser -32 | - | expression tag |
| His -31 | - | expression tag |
| His -30 | - | expression tag |
| His -29 | - | expression tag |
| His -28 | - | expression tag |
| His -27 | - | expression tag |
| His -26 | - | expression tag |
| Ser -25 | - | expression tag |
| Ser -24 | - | expression tag |
| Gly -23 | - | expression tag |
| Leu -22 | - | expression tag |
| Val -21 | - | expression tag |
| Pro -20 | - | expression tag |
| Arg -19 | - | expression tag |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| His -16 | - | expression tag |
| Met -15 | - | expression tag |
| Ala -14 | - | expression tag |
| Ser -13 | - | expression tag |
| Met -12 | - | expression tag |
| Thr -11 | - | expression tag |
| Gly -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Gln -8 | - | expression tag |
| Gln -7 | - | expression tag |
| Met -6 | - | expression tag |
| Gly -5 | - | expression tag |
| Arg -4 | - | expression tag |
| Asp -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 265263.2 | |
| All* | Total formula weight | 265263.2 |
