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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8G6Y

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L33polymer556388.61UniProt (F4NQ61)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
2150S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
3250S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
4350S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
5450S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coliLarge ribosomal subunit protein bL31-A
6XmRNApolymer289036.41Escherichia coli
7YA-site tRNA Phepolymer7624485.51GenBank (1315725308)Escherichia coli
8ZP-site tRNA fMetpolymer7624513.61GenBank (1804121330)Escherichia coli
9a23S rRNApolymer2904941811.61Escherichia coli
10b5S rRNApolymer12038790.11GenBank (1273279017)Escherichia coli
11c50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
12d50S ribosomal protein L3polymer20922291.61UniProt (U9Y9G2)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli
13e50S ribosomal protein L4polymer20122121.61UniProt (A1AGK6)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
14f50S ribosomal protein L5polymer17920333.61UniProt (A0A829CFT8)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
15g50S ribosomal protein L6polymer17718932.81UniProt (A0A862ZNS7)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
16h50S ribosomal protein L9polymer14915789.01UniProt (V0YZK9)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
17i50S ribosomal protein L13polymer14216050.61UniProt (S1EW51)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
18j50S ribosomal protein L14polymer12313565.11UniProt (S1NW45)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
19k50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
20l50S ribosomal protein L16polymer13615329.31UniProt (A1AGK1)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
21m50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3LC97)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
22n50S ribosomal protein L18polymer11712794.71UniProt (E3PKY8)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
23o50S ribosomal protein L19polymer11513159.31UniProt (V0AJX1)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
24p50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
25qRibosomal protein L21polymer10311586.41UniProt (A0A829CSJ4)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
26r50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
27s50S ribosomal protein L23polymer10011222.21UniProt (A0A829CFV1)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
28t50S ribosomal protein L24polymer10411339.31UniProt (A0A1X3KWX7)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
29u50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
30v50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
31w50S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
32x50S ribosomal protein L29polymer637286.51UniProt (D6IEL0)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
33y50S ribosomal protein L30polymer596554.81UniProt (V0YKA9)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
34z50S ribosomal protein L32polymer576463.41UniProt (D7XI28)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
353, 4ZINC IONnon-polymer65.42Chemie (ZN)
36Y3-aminopyridine-4-carboxamidenon-polymer137.11Chemie (YRW)
37Z3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate)non-polymer346.21Chemie (8AN)
38ZN-FORMYLMETHIONINEnon-polymer177.21Chemie (FME)
39a, b, d, zMAGNESIUM IONnon-polymer24.3231Chemie (MG)
40a, cPOTASSIUM IONnon-polymer39.115Chemie (K)
41waterwater18.03460Chemie (HOH)
Sequence modifications
l: 1 - 136 (UniProt: A1AGK1)
PDBExternal DatabaseDetails
Ms6 82Met 82conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains34
Total formula weight1408815.6
Non-Polymers*Number of molecules251
Total formula weight6992.3
All*Total formula weight1415807.9
*Water molecules are not included.

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PDB entries from 2024-07-24

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