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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8G6X

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1a23S rRNApolymer2904941811.61Escherichia coli
2b5S rRNApolymer12038790.11GenBank (1273279017)Escherichia coli
3c50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
4d50S ribosomal protein L3polymer20922291.61UniProt (U9Y9G2)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli
5e50S ribosomal protein L4polymer20122121.61Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
6f50S ribosomal protein L5polymer17920333.61UniProt (A0A829CFT8)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
7g50S ribosomal protein L6polymer17718932.81UniProt (A0A862ZNS7)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
8h50S ribosomal protein L9polymer14915789.01UniProt (V0YZK9)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
9i50S ribosomal protein L13polymer14216050.61UniProt (S1EW51)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
10j50S ribosomal protein L14polymer12313565.11UniProt (S1NW45)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
11k50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
UniProt (by SIFTS) (P02413)
In PDB		Escherichia coli
12l50S ribosomal protein L16polymer13615329.31Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
13m50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3LC97)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
14n50S ribosomal protein L18polymer11712794.71UniProt (E3PKY8)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
15o50S ribosomal protein L19polymer11513159.31UniProt (V0AJX1)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
16p50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
17qRibosomal protein L21polymer10311586.41UniProt (A0A829CSJ4)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
18r50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
19s50S ribosomal protein L23polymer10011222.21UniProt (A0A829CFV1)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
20t50S ribosomal protein L24polymer10411339.31UniProt (A0A1X3KWX7)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli
21u50S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
Pfam (PF01386)
UniProt (by SIFTS) (P68919)
In PDB		Escherichia coli
22v50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
23w50S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
24x50S ribosomal protein L29polymer637286.51UniProt (D6IEL0)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
25y50S ribosomal protein L30polymer596554.81UniProt (V0YKA9)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
26z50S ribosomal protein L32polymer576463.41UniProt (D7XI28)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
27050S ribosomal protein L33polymer556388.61UniProt (F4NQ61)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
28150S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
29250S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
30350S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
31450S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coliLarge ribosomal subunit protein bL31-A
32YA-site tRNA Phepolymer7624485.51GenBank (1315725308)Escherichia coli
33ZP-site tRNA fMetpolymer7624513.61GenBank (1804121330)Escherichia coli
34XmRNApolymer289036.41Escherichia coli
35a, Z, b, c, d...MAGNESIUM IONnon-polymer24.3223Chemie (MG)
36aSPERMIDINEnon-polymer145.217Chemie (SPD)
37aSPERMINEnon-polymer202.31Chemie (SPM)
38a, c, ePOTASSIUM IONnon-polymer39.17Chemie (K)
39aN-FORMYLMETHIONINEnon-polymer177.21Chemie (FME)
403, 4ZINC IONnon-polymer65.42Chemie (ZN)
41Y3-aminobenzamidenon-polymer136.21Chemie (3AB)
42Z3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate)non-polymer346.21Chemie (8AN)
43waterwater18.03462Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains34
Total formula weight1408815.6
Non-Polymers*Number of molecules253
Total formula weight9155.6
All*Total formula weight1417971.2
*Water molecules are not included.

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PDB entries from 2024-07-24

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