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8G2H

Crystal Structure of PRMT4 with Compound YD1113

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Histone-arginine methyltransferase CARM1polymer35940946.51UniProt (Q86X55)
Pfam (PF06325)
Pfam (PF22528)
Homo sapiens (human)Coactivator-associated arginine methyltransferase 1,Protein arginine N-methyltransferase 4
2B
(A)
5'-S-[2-(benzylcarbamamido)ethyl]-5'-thioadenosinenon-polymer459.51Chemie (YVU)
3C, D
(A)
GLYCEROLnon-polymer92.12Chemie (GOL)
4E
(A)
SODIUM IONnon-polymer23.01Chemie (NA)
5F, G, H, I, J
(A)
UNKNOWN ATOM OR IONnon-polymer5Chemie (UNX)
6K
(A)
waterwater18.0185Chemie (HOH)
Sequence modifications
A: 140 - 480 (UniProt: Q86X55)
PDBExternal DatabaseDetails
Met 122-initiating methionine
His 123-expression tag
His 124-expression tag
His 125-expression tag
His 126-expression tag
His 127-expression tag
His 128-expression tag
Ser 129-expression tag
Ser 130-expression tag
Gly 131-expression tag
Arg 132-expression tag
Glu 133-expression tag
Asn 134-expression tag
Leu 135-expression tag
Tyr 136-expression tag
Phe 137-expression tag
Gln 138-expression tag
Gly 139-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight40946.5
Non-Polymers*Number of molecules9
Total formula weight666.7
All*Total formula weight41613.2
*Water molecules are not included.

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PDB entries from 2025-06-18

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