8FRU

60S subunit of the Giardia lamblia 80S ribosome

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	B	60S ribosomal protein uL3	polymer	379	42688.5	1	UniProt (V6TF11) Pfam (PF00297) In PDB	Giardia intestinalis assemblage A	LSU ribosomal protein L3P
2	a	60S ribosomal protein uL15	polymer	149	17167.0	1	UniProt (A8BZ78) Pfam (PF00828) In PDB	Giardia intestinalis assemblage A
3	C	60S ribosomal protein uL4	polymer	316	35048.7	1	UniProt (A8B7H8) Pfam (PF00573) Pfam (PF14374) In PDB	Giardia intestinalis assemblage A
4	I	60S ribosomal protein uL16	polymer	210	24283.2	1	UniProt (A8BM86) Pfam (PF00252) In PDB	Giardia intestinalis assemblage A
5	p	60S ribosomal protein eL43	polymer	94	10508.4	1	UniProt (A8BN26) Pfam (PF01780) In PDB	Giardia intestinalis assemblage A
6	D	60S ribosomal protein uL18	polymer	297	33961.4	1	UniProt (E2RU47) Pfam (PF17144) Pfam (PF14204) In PDB	Giardia intestinalis assemblage A
7	H	60S ribosomal protein uL6	polymer	185	20889.4	1	UniProt (A8BNT5) Pfam (PF00347) In PDB	Giardia intestinalis assemblage A
8	G	60S ribosomal protein eL8	polymer	225	25427.7	1	UniProt (A8BLL7) Pfam (PF01248) In PDB	Giardia intestinalis assemblage A
9	J	60S ribosomal protein uL5	polymer	173	19767.7	1	UniProt (A8BI95) Pfam (PF00281) Pfam (PF00673) In PDB	Giardia intestinalis assemblage A
10	O	60S ribosomal protein uL13	polymer	197	22921.9	1	UniProt (A8BU75) Pfam (PF00572) In PDB	Giardia intestinalis assemblage A
11	L	60S ribosomal protein eL13	polymer	234	26640.3	1	UniProt (A8B6M8) Pfam (PF01294) In PDB	Giardia intestinalis assemblage A
12	M	60S ribosomal protein eL14	polymer	131	14785.5	1	UniProt (A8B4F8) Pfam (PF01929) In PDB	Giardia intestinalis assemblage A
13	N	60S ribosomal protein eL15	polymer	204	24353.7	1	UniProt (A8B8Z6) Pfam (PF00827) In PDB	Giardia intestinalis assemblage A
14	Q	60S ribosomal protein eL18	polymer	179	20207.8	1	UniProt (A8B4T7) Pfam (PF17135) In PDB	Giardia intestinalis assemblage A
15	S	60S ribosomal protein eL20	polymer	205	24389.2	1	UniProt (V6TB90) Pfam (PF01775) In PDB	Giardia intestinalis assemblage A
16	R	60S ribosomal protein eL19	polymer	196	23199.2	1	UniProt (A8BH61) Pfam (PF01280) In PDB	Giardia intestinalis assemblage A
17	T	60S ribosomal protein eL21	polymer	159	18296.4	1	UniProt (A8B2Q4) Pfam (PF01157) In PDB	Giardia intestinalis assemblage A
18	V	60S ribosomal protein uL14	polymer	142	15450.0	1	UniProt (A8BS37) Pfam (PF00238) In PDB	Giardia intestinalis assemblage A
19	P	60S ribosomal protein uL22	polymer	164	18722.8	1	UniProt (A8BE76) Pfam (PF00237) In PDB	Giardia intestinalis assemblage A
20	X	60S ribosomal protein uL23	polymer	141	16053.9	1	UniProt (A8BMP6) Pfam (PF03939) Pfam (PF00276) In PDB	Giardia intestinalis assemblage A
21	Y	60S ribosomal protein uL24	polymer	135	15621.4	1	UniProt (V6TD19) Pfam (PF16906) In PDB	Giardia intestinalis assemblage A
22	W	60S ribosomal protein eL24	polymer	102	12005.2	1	UniProt (A8BRH7) Pfam (PF01246) In PDB	Giardia intestinalis assemblage A
23	Z	60S ribosomal protein eL27	polymer	135	15374.9	1	UniProt (A8B1T3) Pfam (PF00467) Pfam (PF01777) In PDB	Giardia intestinalis assemblage A
24	b	60S ribosomal protein eL29	polymer	62	7363.6	1	UniProt (V6TAA6) Pfam (PF01779) In PDB	Giardia intestinalis assemblage A
25	h	60S ribosomal protein uL29	polymer	124	14316.3	1	UniProt (A0A132NRN1) Pfam (PF00831) In PDB	Giardia intestinalis assemblage A
26	F	60S ribosomal protein uL30	polymer	235	27103.4	1	UniProt (A8BRY6) Pfam (PF00327) In PDB	Giardia intestinalis assemblage A
27	d	60S ribosomal protein eL31	polymer	106	12184.1	1	UniProt (A8BMP3) Pfam (PF01198) In PDB	Giardia intestinalis assemblage A
28	e	60S ribosomal protein eL32	polymer	136	15986.0	1	UniProt (A8BMD9) Pfam (PF01655) In PDB	Giardia intestinalis assemblage A
29	g	60S ribosomal protein eL34	polymer	120	13528.8	1	UniProt (A8BMF7) Pfam (PF01199) In PDB	Giardia intestinalis assemblage A
30	f	60S ribosomal protein eL33	polymer	123	13913.1	1	UniProt (A8BKK5) Pfam (PF01247) In PDB	Giardia intestinalis assemblage A
31	i	60S ribosomal protein eL36	polymer	90	10586.7	1	UniProt (A8BYA6) Pfam (PF01158) In PDB	Giardia intestinalis assemblage A
32	k	60S ribosomal protein eL38	polymer	77	8605.1	1	UniProt (A8B481) Pfam (PF01781) In PDB	Giardia intestinalis assemblage A
33	o	60S ribosomal protein eL42	polymer	106	12311.7	1	UniProt (A8BQU8) Pfam (PF00935) In PDB	Giardia intestinalis assemblage A
34	U	60S ribosomal protein eL22	polymer	171	19942.4	1	UniProt (A8BW84) Pfam (PF01776) In PDB	Giardia intestinalis assemblage A
35	c	60S ribosomal protein eL30	polymer	109	11698.6	1	UniProt (A8B5N7) Pfam (PF01248) In PDB	Giardia intestinalis assemblage A
36	j	60S ribosomal protein eL37	polymer	100	11473.3	1	UniProt (V6TG99) Pfam (PF01907) In PDB	Giardia intestinalis assemblage A
37	l	60S ribosomal protein eL39	polymer	51	6527.0	1		Giardia intestinalis assemblage A
38	m	60S ribosomal protein eL40	polymer	127	14343.7	1	UniProt (A8BXE1) Pfam (PF00240) Pfam (PF01020) In PDB	Giardia intestinalis assemblage A
39	A	60S ribosomal protein uL2	polymer	251	27090.5	1	UniProt (E2RTN4) Pfam (PF00181) Pfam (PF03947) In PDB	Giardia intestinalis assemblage A
40	n	60S ribosomal protein eL41	polymer	25	2145.6	1		Giardia intestinalis assemblage A
41	3	5S rRNA	polymer	120	38672.0	1	GenBank (1940868085)	Giardia intestinalis assemblage A
42	4	5.8S rRNA	polymer	141	45586.3	1	GenBank (583967408)	Giardia intestinalis assemblage A
43	1	28S rRNA	polymer	2687	871348.8	1	GenBank (2333213660)	Giardia intestinalis assemblage A
44	1, B, A	POTASSIUM ION	non-polymer		39.1	27	Chemie (K)
45	4, 1, a, V, P...	MAGNESIUM ION	non-polymer		24.3	129	Chemie (MG)
46	j, m	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
47	1, 4	SODIUM ION	non-polymer		23.0	33	Chemie (NA)
48	1	SPERMIDINE	non-polymer		145.2	1	Chemie (SPD)
49		water	water		18.0	3122	Chemie (HOH)

Sequence modifications

4: 1 - 141 (GenBank: 583967408)

PDB	External Database	Details
C 138	-	insertion

1: 1 - 2687 (GenBank: 2333213660)

PDB	External Database	Details
U 1894	-	insertion

Contents of the asymmetric unit

Polymers	Number of chains	43
	Total formula weight	1682491.3
Non-Polymers*	Number of molecules	192
	Total formula weight	5225.7
All*	Total formula weight	1687717.0

*Water molecules are not included.