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8FL0

Human nucleolar pre-60S ribosomal subunit (State H)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(BA)
60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
Homo sapiens (human)Large ribosomal subunit protein uL11
2B
(L3)
28S rRNApolymer50701640222.11GenBank (86475748)Homo sapiens (human)
3C
(L4)
5S rRNApolymer12138998.11GenBank (23898)Homo sapiens (human)
4D
(L5)
60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
5E
(L7)
60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
6F
(L8)
60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
7G
(LB)
60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
8H
(LC)
60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
9I
(LE)
60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
10J
(LG)
60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
11K
(LL)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
12L
(LN)
60S ribosomal protein L3polymer40346224.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
13M
(LQ)
60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
14N
(LT)
60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
15O
(NB)
Guanine nucleotide-binding protein-like 3polymer54962098.21UniProt (Q9BVP2)
Pfam (PF08701)
Pfam (PF01926)
Homo sapiens (human)E2-induced gene 3 protein,Novel nucleolar protein 47,NNP47,Nucleolar GTP-binding protein 3,Nucleostemin
16P
(NC)
Nucleolar GTP-binding protein 2polymer73183796.11UniProt (Q13823)
Pfam (PF08153)
Pfam (PF01926)
Homo sapiens (human)Autoantigen NGP-1
17Q
(ND)
Ribosome production factor 2 homologpolymer30635658.11UniProt (Q9H7B2)
Pfam (PF04427)
Homo sapiens (human)Brix domain-containing protein 1,Ribosome biogenesis protein RPF2 homolog
18R
(NF)
Ribosome biogenesis protein NSA2 homologpolymer26030136.71UniProt (O95478)
Pfam (PF01201)
Homo sapiens (human)Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1
19S
(NJ)
Notchless protein homolog 1polymer48553387.11UniProt (Q9NVX2)
Pfam (PF08154)
Pfam (PF00400)
Homo sapiens (human)
20T
(NK)
Protein LLP homologpolymer12915268.41UniProt (Q9BRT6)
Pfam (PF10169)
Homo sapiens (human)Protein LAPS18-like
21U
(NZ)
Coiled-coil domain-containing protein 86polymer36040312.71UniProt (Q9H6F5)
Pfam (PF03879)
Homo sapiens (human)Cytokine-induced protein with coiled-coil domain
22V
(SA)
60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
23W
(SB)
60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)Large ribosomal subunit protein uL18
24X
(SC)
60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
25Y
(SD)
60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
26Z
(SG)
60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
27AA
(SK)
Eukaryotic translation initiation factor 6polymer24526620.01UniProt (P56537)
Pfam (PF01912)
Homo sapiens (human)eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP)
28BA
(SQ)
mRNA turnover protein 4 homologpolymer23927602.51UniProt (Q9UKD2)
Pfam (PF00466)
Pfam (PF17777)
Homo sapiens (human)Ribosome assembly factor MRTO4
29CA
(SR)
GTP-binding protein 4polymer63474107.81UniProt (Q9BZE4)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Homo sapiens (human)Chronic renal failure gene protein,GTP-binding protein NGB,Nucleolar GTP-binding protein 1
30DA
(ST)
Ribosome biogenesis regulatory protein homologpolymer36541278.51UniProt (Q15050)
Pfam (PF04939)
Homo sapiens (human)
31EA
(SV)
Probable ribosome biogenesis protein RLP24polymer16319666.31UniProt (Q9UHA3)
Pfam (PF01246)
Homo sapiens (human)Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like
32AB, EB, FA, GA, HA...
(NC, SR, L3, L5, LT)
MAGNESIUM IONnon-polymer24.322Chemie (MG)
33ZA
(NC)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
34BB, DB
(NC, SR)
POTASSIUM IONnon-polymer39.12Chemie (K)
35CB
(SR)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
36FB
(SV)
ZINC IONnon-polymer65.41Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains31
Total formula weight2607110.4
Non-Polymers*Number of molecules27
Total formula weight1644.7
All*Total formula weight2608755.1
*Water molecules are not included.

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PDB entries from 2025-06-11

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