Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (BA) | 60S ribosomal protein L12 | polymer | 165 | 17847.6 | 1 | UniProt (P30050) Pfam (PF03946) Pfam (PF00298) | Homo sapiens (human) | Large ribosomal subunit protein uL11 |
| 2 | B (BB) | 60S ribosomal protein L10a | polymer | 217 | 24879.4 | 1 | UniProt (P62906) Pfam (PF00687) | Homo sapiens (human) | CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6 |
| 3 | C (BC) | WD repeat-containing protein 55 | polymer | 383 | 42123.0 | 1 | UniProt (Q9H6Y2) Pfam (PF12894) Pfam (PF00400) | Homo sapiens (human) | |
| 4 | D (L1) | 5.8S rRNA | polymer | 157 | 50449.8 | 1 | GenBank (555853) | Homo sapiens (human) | |
| 5 | E (L2) | ITS2 rRNA | polymer | 1167 | 376425.3 | 1 | GenBank (86475748) | Homo sapiens (human) | |
| 6 | F (L3) | 28S rRNA | polymer | 5070 | 1640221.1 | 1 | GenBank (86475748) | Homo sapiens (human) | |
| 7 | G (L6) | 60S ribosomal protein L13 | polymer | 211 | 24321.7 | 1 | UniProt (P26373) Pfam (PF01294) | Homo sapiens (human) | Breast basic conserved protein 1,Large ribosomal subunit protein eL13 |
| 8 | H (L7) | 60S ribosomal protein L13a | polymer | 203 | 23633.4 | 1 | UniProt (P40429) Pfam (PF00572) | Homo sapiens (human) | 23 kDa highly basic protein,Large ribosomal subunit protein uL13 |
| 9 | I (L8) | 60S ribosomal protein L14 | polymer | 215 | 23485.0 | 1 | UniProt (P50914) Pfam (PF01929) | Homo sapiens (human) | CAG-ISL 7,Large ribosomal subunit protein eL14 |
| 10 | J (L9) | 60S ribosomal protein L15 | polymer | 204 | 24207.3 | 1 | UniProt (P61313) Pfam (PF00827) | Homo sapiens (human) | Large ribosomal subunit protein eL15 |
| 11 | K (LA) | 60S ribosomal protein L17 | polymer | 184 | 21443.2 | 1 | UniProt (P18621) Pfam (PF00237) | Homo sapiens (human) | 60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1 |
| 12 | L (LB) | 60S ribosomal protein L18 | polymer | 188 | 21687.7 | 1 | UniProt (Q07020) Pfam (PF17135) | Homo sapiens (human) | Large ribosomal subunit protein eL18 |
| 13 | M (LC) | 60S ribosomal protein L18a | polymer | 176 | 20808.5 | 1 | UniProt (Q02543) Pfam (PF01775) | Homo sapiens (human) | Large ribosomal subunit protein eL20 |
| 14 | N (LD) | 60S ribosomal protein L19 | polymer | 196 | 23535.3 | 1 | UniProt (P84098) Pfam (PF01280) | Homo sapiens (human) | Large ribosomal subunit protein eL19 |
| 15 | O (LE) | 60S ribosomal protein L21 | polymer | 160 | 18610.0 | 1 | UniProt (P46778) Pfam (PF01157) | Homo sapiens (human) | Large ribosomal subunit protein eL21 |
| 16 | P (LG) | 60S ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | UniProt (P62829) Pfam (PF00238) | Homo sapiens (human) | 60S ribosomal protein L17,Large ribosomal subunit protein uL14 |
| 17 | Q (LH) | 60S ribosomal protein L23a | polymer | 156 | 17740.2 | 1 | UniProt (P62750) Pfam (PF03939) Pfam (PF00276) | Homo sapiens (human) | Large ribosomal subunit protein uL23 |
| 18 | R (LI) | 60S ribosomal protein L26 | polymer | 145 | 17303.4 | 1 | UniProt (P61254) Pfam (PF16906) Pfam (PF00467) | Homo sapiens (human) | Large ribosomal subunit protein uL24 |
| 19 | S (LJ) | 60S ribosomal protein L27 | polymer | 136 | 15835.8 | 1 | UniProt (P61353) Pfam (PF00467) Pfam (PF01777) | Homo sapiens (human) | Large ribosomal subunit protein eL27 |
| 20 | T (LK) | 60S ribosomal protein L27a | polymer | 148 | 16604.5 | 1 | UniProt (P46776) Pfam (PF00828) | Homo sapiens (human) | Large ribosomal subunit protein uL15 |
| 21 | U (LL) | 60S ribosomal protein L28 | polymer | 137 | 15784.6 | 1 | UniProt (P46779) Pfam (PF01778) | Homo sapiens (human) | Large ribosomal subunit protein eL28 |
| 22 | V (LN) | 60S ribosomal protein L3 | polymer | 403 | 46224.1 | 1 | UniProt (P39023) Pfam (PF00297) | Homo sapiens (human) | HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3 |
| 23 | W (LO) | 60S ribosomal protein L30 | polymer | 115 | 12805.1 | 1 | UniProt (P62888) Pfam (PF01248) | Homo sapiens (human) | Large ribosomal subunit protein eL30 |
| 24 | X (LP) | 60S ribosomal protein L31 | polymer | 125 | 14494.9 | 1 | UniProt (P62899) Pfam (PF01198) | Homo sapiens (human) | Large ribosomal subunit protein eL31 |
| 25 | Y (LQ) | 60S ribosomal protein L32 | polymer | 135 | 15898.9 | 1 | UniProt (P62910) Pfam (PF01655) | Homo sapiens (human) | Large ribosomal subunit protein eL32 |
| 26 | Z (LR) | 60S ribosomal protein L34 | polymer | 117 | 13326.1 | 1 | UniProt (P49207) Pfam (PF01199) | Homo sapiens (human) | Large ribosomal subunit protein eL34 |
| 27 | AA (LS) | 60S ribosomal protein L35 | polymer | 123 | 14593.6 | 1 | UniProt (P42766) Pfam (PF00831) | Homo sapiens (human) | Large ribosomal subunit protein uL29 |
| 28 | BA (LT) | 60S ribosomal protein L35a | polymer | 110 | 12564.7 | 1 | UniProt (P18077) Pfam (PF01247) | Homo sapiens (human) | Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33 |
| 29 | CA (LU) | 60S ribosomal protein L36 | polymer | 105 | 12290.9 | 1 | UniProt (Q9Y3U8) Pfam (PF01158) | Homo sapiens (human) | Large ribosomal subunit protein eL36 |
| 30 | DA (LW) | 60S ribosomal protein L37 | polymer | 97 | 11111.0 | 1 | UniProt (P61927) Pfam (PF01907) | Homo sapiens (human) | G1.16 |
| 31 | EA (NA) | Nucleolar complex protein 2 homolog | polymer | 749 | 85028.4 | 1 | UniProt (Q9Y3T9) Pfam (PF03715) | Homo sapiens (human) | Protein NOC2 homolog,NOC2-like protein,Novel INHAT repressor |
| 32 | FA (NB) | Guanine nucleotide-binding protein-like 3 | polymer | 549 | 62098.2 | 1 | UniProt (Q9BVP2) Pfam (PF08701) Pfam (PF01926) | Homo sapiens (human) | E2-induced gene 3 protein,Novel nucleolar protein 47,NNP47,Nucleolar GTP-binding protein 3,Nucleostemin |
| 33 | GA (NF) | Ribosome biogenesis protein NSA2 homolog | polymer | 260 | 30136.7 | 1 | UniProt (O95478) Pfam (PF01201) | Homo sapiens (human) | Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1 |
| 34 | HA (NH) | 60S ribosome subunit biogenesis protein NIP7 homolog | polymer | 180 | 20491.6 | 1 | UniProt (Q9Y221) Pfam (PF17833) Pfam (PF03657) | Homo sapiens (human) | KD93,Nucleolar pre-rRNA processing protein NIP7 |
| 35 | IA (NI) | ATP-dependent RNA helicase DDX54 | polymer | 881 | 98769.2 | 1 | UniProt (Q8TDD1) Pfam (PF00270) Pfam (PF00271) Pfam (PF08147) | Homo sapiens (human) | ATP-dependent RNA helicase DP97,DEAD box RNA helicase 97 kDa,DEAD box protein 54 |
| 36 | JA (NK) | Protein LLP homolog | polymer | 129 | 15268.4 | 1 | UniProt (Q9BRT6) Pfam (PF10169) | Homo sapiens (human) | Protein LAPS18-like |
| 37 | KA (SA) | 60S ribosomal protein L4 | polymer | 427 | 47804.6 | 1 | UniProt (P36578) Pfam (PF00573) Pfam (PF14374) | Homo sapiens (human) | 60S ribosomal protein L1,Large ribosomal subunit protein uL4 |
| 38 | LA (SC) | 60S ribosomal protein L6 | polymer | 288 | 32810.2 | 1 | UniProt (Q02878) Pfam (PF03868) Pfam (PF01159) | Homo sapiens (human) | Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107 |
| 39 | MA (SD) | 60S ribosomal protein L7 | polymer | 248 | 29291.0 | 1 | UniProt (P18124) Pfam (PF08079) Pfam (PF00327) | Homo sapiens (human) | Large ribosomal subunit protein uL30 |
| 40 | NA (SE) | 60S ribosomal protein L7a | polymer | 266 | 30061.8 | 1 | UniProt (P62424) Pfam (PF01248) | Homo sapiens (human) | Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3 |
| 41 | OA (SG) | 60S ribosomal protein L9 | polymer | 192 | 21899.5 | 1 | UniProt (P32969) Pfam (PF00347) | Homo sapiens (human) | Large ribosomal subunit protein uL6 |
| 42 | PA (SH) | MKI67 FHA domain-interacting nucleolar phosphoprotein | polymer | 293 | 34285.3 | 1 | UniProt (Q9BYG3) Pfam (PF00076) Pfam (PF12196) | Homo sapiens (human) | Nucleolar phosphoprotein Nopp34,Nucleolar protein interacting with the FHA domain of pKI-67,hNIFK |
| 43 | QA (SI) | 60S ribosomal protein L7-like 1 | polymer | 255 | 29730.4 | 1 | UniProt (Q6DKI1) Pfam (PF08079) Pfam (PF00327) | Homo sapiens (human) | Large ribosomal subunit protein uL30-like 1 |
| 44 | RA (SJ) | pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 | polymer | 847 | 96726.9 | 1 | UniProt (Q8IY81) Pfam (PF01728) Pfam (PF11861) Pfam (PF07780) | Homo sapiens (human) | Protein ftsJ homolog 3,Putative rRNA methyltransferase 3 |
| 45 | SA (SK) | Eukaryotic translation initiation factor 6 | polymer | 245 | 26620.0 | 1 | UniProt (P56537) Pfam (PF01912) | Homo sapiens (human) | eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP) |
| 46 | TA (SL) | Ribosomal L1 domain-containing protein 1 | polymer | 490 | 55089.8 | 1 | UniProt (O76021) Pfam (PF00687) | Homo sapiens (human) | CATX-11,Cellular senescence-inhibited gene protein,Protein PBK1 |
| 47 | UA (SM) | Pescadillo homolog | polymer | 588 | 68114.7 | 1 | UniProt (O00541) Pfam (PF06732) Pfam (PF16589) | Homo sapiens (human) | |
| 48 | VA (SN) | Probable rRNA-processing protein EBP2 | polymer | 306 | 34925.1 | 1 | UniProt (Q99848) Pfam (PF05890) | Homo sapiens (human) | EBNA1-binding protein 2,Nucleolar protein p40 |
| 49 | WA (SO) | Ribosome biogenesis protein BRX1 homolog | polymer | 353 | 41483.5 | 1 | UniProt (Q8TDN6) Pfam (PF04427) | Homo sapiens (human) | Brix domain-containing protein 2 |
| 50 | XA (SP) | Ribosome biogenesis protein WDR12 | polymer | 423 | 47768.9 | 1 | UniProt (Q9GZL7) Pfam (PF08154) Pfam (PF00400) | Homo sapiens (human) | WD repeat-containing protein 12 |
| 51 | YA (SQ) | mRNA turnover protein 4 homolog | polymer | 239 | 27602.5 | 1 | UniProt (Q9UKD2) Pfam (PF00466) Pfam (PF17777) | Homo sapiens (human) | Ribosome assembly factor MRTO4 |
| 52 | ZA (SR) | GTP-binding protein 4 | polymer | 634 | 74107.8 | 1 | UniProt (Q9BZE4) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Homo sapiens (human) | Chronic renal failure gene protein,GTP-binding protein NGB,Nucleolar GTP-binding protein 1 |
| 53 | AB (SS) | Ribosome biogenesis protein BOP1 | polymer | 746 | 83901.5 | 1 | UniProt (Q14137) Pfam (PF08145) Pfam (PF00400) | Homo sapiens (human) | Block of proliferation 1 protein |
| 54 | BB (ST) | Ribosome biogenesis regulatory protein homolog | polymer | 365 | 41278.5 | 1 | UniProt (Q15050) Pfam (PF04939) | Homo sapiens (human) | |
| 55 | CB (SU) | Nucleolar complex protein 3 homolog | polymer | 800 | 92709.9 | 1 | UniProt (Q8WTT2) Pfam (PF07540) Pfam (PF03914) | Homo sapiens (human) | NOC3 protein homolog,Factor for adipocyte differentiation 24,NOC3-like protein,Nucleolar complex-associated protein 3-like protein |
| 56 | DB (SV) | Probable ribosome biogenesis protein RLP24 | polymer | 163 | 19666.3 | 1 | UniProt (Q9UHA3) Pfam (PF01246) | Homo sapiens (human) | Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like |
| 57 | EB (SW) | ATP-dependent RNA helicase DDX18 | polymer | 670 | 75526.8 | 1 | UniProt (Q9NVP1) Pfam (PF00270) Pfam (PF00271) Pfam (PF13959) | Homo sapiens (human) | DEAD box protein 18,Myc-regulated DEAD box protein,MrDb |
| 58 | FB (SY) | Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase | polymer | 812 | 89441.8 | 1 | UniProt (P46087) Pfam (PF22458) Pfam (PF01189) Pfam (PF08062) | Homo sapiens (human) | Nucleolar protein 1,Nucleolar protein 2 homolog,Proliferating-cell nucleolar antigen p120,Proliferation-associated nucleolar protein p120 |
| 59 | GB (SZ) | Nucleolar protein 16 | polymer | 178 | 21234.5 | 1 | UniProt (Q9Y3C1) Pfam (PF09420) | Homo sapiens (human) | HBV pre-S2 trans-regulated protein 3 |
| 60 | AC, AD, BC, BD, CC... (L3, SR, SU, L1, L9...) | MAGNESIUM ION | non-polymer | 24.3 | 70 | Chemie (MG) | |||
| 61 | EE, TD, VD (SV, LR, LW) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 62 | WD (NI) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 63 | AE (SR) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 64 | BE (SR) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) |
Sequence modifications
L3: 1 - 5070 (GenBank: 86475748)
| PDB | External Database | Details |
|---|---|---|
| G 2503 | U 115847 | conflict |
| C 2505 | G 115849 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 4039022.5 | |
| Non-Polymers* | Number of molecules | 76 |
| Total formula weight | 2807.1 | |
| All* | Total formula weight | 4041829.6 |
