8FKYEntity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (BA) | 60S ribosomal protein L12 | polymer | 165 | 17847.6 | 1 | UniProt (P30050) Pfam (PF03946) Pfam (PF00298) | Homo sapiens (human) | Large ribosomal subunit protein uL11 |
| 2 | B (BB) | 60S ribosomal protein L10a | polymer | 217 | 24879.4 | 1 | UniProt (P62906) Pfam (PF00687) | Homo sapiens (human) | CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6 |
| 3 | C (BC) | WD repeat-containing protein 55 | polymer | 383 | 42123.0 | 1 | UniProt (Q9H6Y2) Pfam (PF24796) | Homo sapiens (human) | |
| 4 | D (L1) | 5.8S rRNA | polymer | 157 | 50449.8 | 1 | GenBank (555853) | Homo sapiens (human) | |
| 5 | E (L2) | ITS2 rRNA | polymer | 1167 | 376425.3 | 1 | GenBank (86475748) | Homo sapiens (human) | |
| 6 | F (L3) | 28S rRNA | polymer | 5070 | 1640221.1 | 1 | GenBank (86475748) | Homo sapiens (human) | |
| 7 | G (L6) | 60S ribosomal protein L13 | polymer | 211 | 24321.7 | 1 | UniProt (P26373) Pfam (PF01294) | Homo sapiens (human) | Breast basic conserved protein 1,Large ribosomal subunit protein eL13 |
| 8 | H (L7) | 60S ribosomal protein L13a | polymer | 203 | 23633.4 | 1 | UniProt (P40429) Pfam (PF00572) | Homo sapiens (human) | 23 kDa highly basic protein,Large ribosomal subunit protein uL13 |
| 9 | I (L8) | 60S ribosomal protein L14 | polymer | 215 | 23485.0 | 1 | UniProt (P50914) Pfam (PF01929) | Homo sapiens (human) | CAG-ISL 7,Large ribosomal subunit protein eL14 |
| 10 | J (L9) | 60S ribosomal protein L15 | polymer | 204 | 24207.3 | 1 | UniProt (P61313) Pfam (PF00827) | Homo sapiens (human) | Large ribosomal subunit protein eL15 |
| 11 | K (LA) | 60S ribosomal protein L17 | polymer | 184 | 21443.2 | 1 | UniProt (P18621) Pfam (PF00237) | Homo sapiens (human) | 60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1 |
| 12 | L (LB) | 60S ribosomal protein L18 | polymer | 188 | 21687.7 | 1 | UniProt (Q07020) Pfam (PF17135) | Homo sapiens (human) | Large ribosomal subunit protein eL18 |
| 13 | M (LC) | 60S ribosomal protein L18a | polymer | 176 | 20808.5 | 1 | UniProt (Q02543) Pfam (PF01775) | Homo sapiens (human) | Large ribosomal subunit protein eL20 |
| 14 | N (LD) | 60S ribosomal protein L19 | polymer | 196 | 23535.3 | 1 | UniProt (P84098) Pfam (PF01280) Pfam (PF25476) | Homo sapiens (human) | Large ribosomal subunit protein eL19 |
| 15 | O (LE) | 60S ribosomal protein L21 | polymer | 160 | 18610.0 | 1 | UniProt (P46778) Pfam (PF01157) | Homo sapiens (human) | Large ribosomal subunit protein eL21 |
| 16 | P (LG) | 60S ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | UniProt (P62829) Pfam (PF00238) | Homo sapiens (human) | 60S ribosomal protein L17,Large ribosomal subunit protein uL14 |
| 17 | Q (LH) | 60S ribosomal protein L23a | polymer | 156 | 17740.2 | 1 | UniProt (P62750) Pfam (PF03939) Pfam (PF00276) | Homo sapiens (human) | Large ribosomal subunit protein uL23 |
| 18 | R (LI) | 60S ribosomal protein L26 | polymer | 145 | 17303.4 | 1 | UniProt (P61254) Pfam (PF16906) Pfam (PF00467) | Homo sapiens (human) | Large ribosomal subunit protein uL24 |
| 19 | S (LJ) | 60S ribosomal protein L27 | polymer | 136 | 15835.8 | 1 | UniProt (P61353) Pfam (PF00467) Pfam (PF01777) | Homo sapiens (human) | Large ribosomal subunit protein eL27 |
| 20 | T (LK) | 60S ribosomal protein L27a | polymer | 148 | 16604.5 | 1 | UniProt (P46776) Pfam (PF00828) | Homo sapiens (human) | Large ribosomal subunit protein uL15 |
| 21 | U (LL) | 60S ribosomal protein L28 | polymer | 137 | 15784.6 | 1 | UniProt (P46779) Pfam (PF01778) | Homo sapiens (human) | Large ribosomal subunit protein eL28 |
| 22 | V (LN) | 60S ribosomal protein L3 | polymer | 403 | 46224.1 | 1 | UniProt (P39023) Pfam (PF00297) | Homo sapiens (human) | HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3 |
| 23 | W (LO) | 60S ribosomal protein L30 | polymer | 115 | 12805.1 | 1 | UniProt (P62888) Pfam (PF01248) | Homo sapiens (human) | Large ribosomal subunit protein eL30 |
| 24 | X (LP) | 60S ribosomal protein L31 | polymer | 125 | 14494.9 | 1 | UniProt (P62899) Pfam (PF01198) | Homo sapiens (human) | Large ribosomal subunit protein eL31 |
| 25 | Y (LQ) | 60S ribosomal protein L32 | polymer | 135 | 15898.9 | 1 | UniProt (P62910) Pfam (PF01655) | Homo sapiens (human) | Large ribosomal subunit protein eL32 |
| 26 | Z (LR) | 60S ribosomal protein L34 | polymer | 117 | 13326.1 | 1 | UniProt (P49207) Pfam (PF01199) | Homo sapiens (human) | Large ribosomal subunit protein eL34 |
| 27 | AA (LS) | 60S ribosomal protein L35 | polymer | 123 | 14593.6 | 1 | UniProt (P42766) Pfam (PF00831) | Homo sapiens (human) | Large ribosomal subunit protein uL29 |
| 28 | BA (LT) | 60S ribosomal protein L35a | polymer | 110 | 12564.7 | 1 | UniProt (P18077) Pfam (PF01247) | Homo sapiens (human) | Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33 |
| 29 | CA (LU) | 60S ribosomal protein L36 | polymer | 105 | 12290.9 | 1 | UniProt (Q9Y3U8) Pfam (PF01158) | Homo sapiens (human) | Large ribosomal subunit protein eL36 |
| 30 | DA (LW) | 60S ribosomal protein L37 | polymer | 97 | 11111.0 | 1 | UniProt (P61927) Pfam (PF01907) | Homo sapiens (human) | G1.16 |
| 31 | EA (NA) | Nucleolar complex protein 2 homolog | polymer | 749 | 85028.4 | 1 | UniProt (Q9Y3T9) Pfam (PF03715) | Homo sapiens (human) | Protein NOC2 homolog,NOC2-like protein,Novel INHAT repressor |
| 32 | FA (NB) | Guanine nucleotide-binding protein-like 3 | polymer | 549 | 62098.2 | 1 | UniProt (Q9BVP2) Pfam (PF08701) Pfam (PF01926) | Homo sapiens (human) | E2-induced gene 3 protein,Novel nucleolar protein 47,NNP47,Nucleolar GTP-binding protein 3,Nucleostemin |
| 33 | GA (NF) | Ribosome biogenesis protein NSA2 homolog | polymer | 260 | 30136.7 | 1 | UniProt (O95478) Pfam (PF01201) | Homo sapiens (human) | Hairy cell leukemia protein 1,TGF-beta-inducible nuclear protein 1 |
| 34 | HA (NH) | 60S ribosome subunit biogenesis protein NIP7 homolog | polymer | 180 | 20491.6 | 1 | UniProt (Q9Y221) Pfam (PF17833) Pfam (PF03657) | Homo sapiens (human) | KD93,Nucleolar pre-rRNA processing protein NIP7 |
| 35 | IA (NI) | ATP-dependent RNA helicase DDX54 | polymer | 881 | 98769.2 | 1 | UniProt (Q8TDD1) Pfam (PF00270) Pfam (PF00271) Pfam (PF08147) | Homo sapiens (human) | ATP-dependent RNA helicase DP97,DEAD box RNA helicase 97 kDa,DEAD box protein 54 |
| 36 | JA (NK) | Protein LLP homolog | polymer | 129 | 15268.4 | 1 | UniProt (Q9BRT6) Pfam (PF10169) | Homo sapiens (human) | Protein LAPS18-like |
| 37 | KA (SA) | 60S ribosomal protein L4 | polymer | 427 | 47804.6 | 1 | UniProt (P36578) Pfam (PF00573) Pfam (PF14374) | Homo sapiens (human) | 60S ribosomal protein L1,Large ribosomal subunit protein uL4 |
| 38 | LA (SC) | 60S ribosomal protein L6 | polymer | 288 | 32810.2 | 1 | UniProt (Q02878) Pfam (PF03868) Pfam (PF01159) | Homo sapiens (human) | Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107 |
| 39 | MA (SD) | 60S ribosomal protein L7 | polymer | 248 | 29291.0 | 1 | UniProt (P18124) Pfam (PF08079) Pfam (PF00327) | Homo sapiens (human) | Large ribosomal subunit protein uL30 |
| 40 | NA (SE) | 60S ribosomal protein L7a | polymer | 266 | 30061.8 | 1 | UniProt (P62424) Pfam (PF01248) | Homo sapiens (human) | Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3 |
| 41 | OA (SG) | 60S ribosomal protein L9 | polymer | 192 | 21899.5 | 1 | UniProt (P32969) Pfam (PF00347) | Homo sapiens (human) | Large ribosomal subunit protein uL6 |
| 42 | PA (SH) | MKI67 FHA domain-interacting nucleolar phosphoprotein | polymer | 293 | 34285.3 | 1 | UniProt (Q9BYG3) Pfam (PF00076) Pfam (PF12196) | Homo sapiens (human) | Nucleolar phosphoprotein Nopp34,Nucleolar protein interacting with the FHA domain of pKI-67,hNIFK |
| 43 | QA (SI) | 60S ribosomal protein L7-like 1 | polymer | 255 | 29730.4 | 1 | UniProt (Q6DKI1) Pfam (PF08079) Pfam (PF00327) | Homo sapiens (human) | Large ribosomal subunit protein uL30-like 1 |
| 44 | RA (SJ) | pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 | polymer | 847 | 96726.9 | 1 | UniProt (Q8IY81) Pfam (PF01728) Pfam (PF11861) Pfam (PF07780) | Homo sapiens (human) | Protein ftsJ homolog 3,Putative rRNA methyltransferase 3 |
| 45 | SA (SK) | Eukaryotic translation initiation factor 6 | polymer | 245 | 26620.0 | 1 | UniProt (P56537) Pfam (PF01912) | Homo sapiens (human) | eIF-6,B(2)GCN homolog,B4 integrin interactor,CAB,p27(BBP) |
| 46 | TA (SL) | Ribosomal L1 domain-containing protein 1 | polymer | 490 | 55089.8 | 1 | UniProt (O76021) Pfam (PF00687) | Homo sapiens (human) | CATX-11,Cellular senescence-inhibited gene protein,Protein PBK1 |
| 47 | UA (SM) | Pescadillo homolog | polymer | 588 | 68114.7 | 1 | UniProt (O00541) Pfam (PF06732) Pfam (PF16589) | Homo sapiens (human) | |
| 48 | VA (SN) | Probable rRNA-processing protein EBP2 | polymer | 306 | 34925.1 | 1 | UniProt (Q99848) Pfam (PF05890) | Homo sapiens (human) | EBNA1-binding protein 2,Nucleolar protein p40 |
| 49 | WA (SO) | Ribosome biogenesis protein BRX1 homolog | polymer | 353 | 41483.5 | 1 | UniProt (Q8TDN6) Pfam (PF04427) | Homo sapiens (human) | Brix domain-containing protein 2 |
| 50 | XA (SP) | Ribosome biogenesis protein WDR12 | polymer | 423 | 47768.9 | 1 | UniProt (Q9GZL7) Pfam (PF00400) Pfam (PF08154) | Homo sapiens (human) | WD repeat-containing protein 12 |
| 51 | YA (SQ) | mRNA turnover protein 4 homolog | polymer | 239 | 27602.5 | 1 | UniProt (Q9UKD2) Pfam (PF00466) Pfam (PF17777) | Homo sapiens (human) | Ribosome assembly factor MRTO4 |
| 52 | ZA (SR) | GTP-binding protein 4 | polymer | 634 | 74107.8 | 1 | UniProt (Q9BZE4) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Homo sapiens (human) | Chronic renal failure gene protein,GTP-binding protein NGB,Nucleolar GTP-binding protein 1 |
| 53 | AB (SS) | Ribosome biogenesis protein BOP1 | polymer | 746 | 83901.5 | 1 | UniProt (Q14137) Pfam (PF00400) Pfam (PF08145) | Homo sapiens (human) | Block of proliferation 1 protein |
| 54 | BB (ST) | Ribosome biogenesis regulatory protein homolog | polymer | 365 | 41278.5 | 1 | UniProt (Q15050) Pfam (PF04939) | Homo sapiens (human) | |
| 55 | CB (SU) | Nucleolar complex protein 3 homolog | polymer | 800 | 92709.9 | 1 | UniProt (Q8WTT2) Pfam (PF07540) Pfam (PF03914) | Homo sapiens (human) | NOC3 protein homolog,Factor for adipocyte differentiation 24,NOC3-like protein,Nucleolar complex-associated protein 3-like protein |
| 56 | DB (SV) | Probable ribosome biogenesis protein RLP24 | polymer | 163 | 19666.3 | 1 | UniProt (Q9UHA3) Pfam (PF01246) | Homo sapiens (human) | Ribosomal L24 domain-containing protein 1,Ribosomal protein L24-like |
| 57 | EB (SW) | ATP-dependent RNA helicase DDX18 | polymer | 670 | 75526.8 | 1 | UniProt (Q9NVP1) Pfam (PF00270) Pfam (PF00271) Pfam (PF13959) | Homo sapiens (human) | DEAD box protein 18,Myc-regulated DEAD box protein,MrDb |
| 58 | FB (SY) | Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase | polymer | 812 | 89441.8 | 1 | UniProt (P46087) Pfam (PF08062) Pfam (PF22458) Pfam (PF01189) | Homo sapiens (human) | Nucleolar protein 1,Nucleolar protein 2 homolog,Proliferating-cell nucleolar antigen p120,Proliferation-associated nucleolar protein p120 |
| 59 | GB (SZ) | Nucleolar protein 16 | polymer | 178 | 21234.5 | 1 | UniProt (Q9Y3C1) Pfam (PF09420) | Homo sapiens (human) | HBV pre-S2 trans-regulated protein 3 |
| 60 | AC, AD, BC, BD, CC... (L3, SR, SU, L1, L9...) | MAGNESIUM ION | non-polymer | 24.3 | 70 | Chemie (MG) PubChem (888) | |||
| 61 | EE, TD, VD (SV, LR, LW) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 62 | WD (NI) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 63 | AE (SR) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 64 | BE (SR) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) PubChem (813) |
Sequence modifications
L3: 1 - 5070 (GenBank: 86475748)
| PDB | External Database | Details |
|---|---|---|
| G 2503 | U 115847 | conflict |
| C 2505 | G 115849 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 59 |
| Total formula weight | 4039022.5 | |
| Non-Polymers* | Number of molecules | 76 |
| Total formula weight | 2807.1 | |
| All* | Total formula weight | 4041829.6 |
