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8F86

SIRT6 bound to an H3K9Ac nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13515271.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2A type 1polymer12913978.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
4D, H
(D, H)
Histone H2Bpolymer12213524.82UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
5I
(I)
DNA (148-MER)polymer18557400.61synthetic construct
6J
(J)
DNA (148-MER)polymer18556831.21synthetic construct
7K
(K)
NAD-dependent protein deacylase sirtuin-6polymer35539152.91UniProt (Q8N6T7)
Pfam (PF02146)
Homo sapiens (human)NAD-dependent protein deacetylase sirtuin-6,Protein mono-ADP-ribosyltransferase sirtuin-6,Regulatory protein SIR2 homolog 6,hSIRT6,SIR2-like protein 6
8L
(A)
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(3aR,5R,6R,6aR)-6-hydroxytetrahydro-2H-furo[2,3-d][1,3]oxathiol-5-yl]methyl dihydrogen diphosphate (non-preferred name)non-polymer587.41Chemie (ZSL)
9M
(K)
ZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103conflict
Ala 110Cys 111conflict
C, G: 1 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100conflict
Ser 123Ala 124conflict
D, H: 1 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33variant
K: 2 - 355 (UniProt: Q8N6T7)
PDBExternal DatabaseDetails
Cys 1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight261460.8
Non-Polymers*Number of molecules2
Total formula weight652.8
All*Total formula weight262113.6
*Water molecules are not included.

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PDB entries from 2025-06-11

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