8EUP
Ytm1 associated 60S nascent ribosome State 1A
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | RNA (1422-MER) | polymer | 3497 | 1129522.1 | 1 | GenBank (157310483) | Schizosaccharomyces pombe (fission yeast) | |
| 2 | 2 | RNA (146-MER) | polymer | 165 | 52880.2 | 1 | GenBank (288694) | Schizosaccharomyces pombe (fission yeast) | |
| 3 | 3 | Protein mak16 | polymer | 302 | 35686.9 | 1 | UniProt (Q9UTE6) Pfam (PF01778) Pfam (PF04874) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 4 | 4 | Ribosomal RNA-processing protein 1 homolog | polymer | 217 | 25784.9 | 1 | UniProt (Q9Y7M6) Pfam (PF05997) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 5 | 5 | Ribosome biogenesis protein nsa1 | polymer | 387 | 43829.3 | 1 | UniProt (O94698) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 6 | 6 | RNA (55-MER) | polymer | 300 | 95694.8 | 1 | GenBank (157310483) | Schizosaccharomyces pombe (fission yeast) | |
| 7 | A | Ribosome biogenesis protein brx1 | polymer | 295 | 33950.7 | 1 | UniProt (Q9HGL6) Pfam (PF04427) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 8 | B | 60S ribosomal protein L3-A | polymer | 388 | 43889.8 | 1 | UniProt (P40372) Pfam (PF00297) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 9 | C | 60S ribosomal protein L4-B | polymer | 363 | 39982.3 | 1 | UniProt (Q9P784) Pfam (PF00573) Pfam (PF14374) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 10 | D | RNA helicase | polymer | 578 | 65357.3 | 1 | UniProt (S6CCW7) Pfam (PF13959) Pfam (PF00270) Pfam (PF00271) UniProt (by SIFTS) (Q09916) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 11 | E | 60S ribosomal protein L6 | polymer | 195 | 21286.0 | 1 | UniProt (P79071) Pfam (PF01159) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 12 | F | 60S ribosomal protein L7-B | polymer | 250 | 28499.3 | 1 | UniProt (P25457) Pfam (PF08079) Pfam (PF00327) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 13 | G | 60S ribosomal protein L8 | polymer | 259 | 28659.8 | 1 | UniProt (O13672) Pfam (PF01248) In PDB | Schizosaccharomyces pombe (fission yeast) | L4,L7A |
| 14 | H | 60S ribosomal protein L9-A | polymer | 190 | 21545.0 | 1 | UniProt (Q10232) Pfam (PF00347) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 15 | J | Probable rRNA-processing protein ebp2 | polymer | 333 | 37895.0 | 1 | UniProt (O13802) Pfam (PF05890) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 16 | K | Putative ribosome biogenesis protein C8F11.04 | polymer | 373 | 41431.9 | 1 | UniProt (Q9UT32) Pfam (PF00687) In PDB | Schizosaccharomyces pombe (fission yeast) | U3 snoRNP-associated protein C8F11.04 |
| 17 | L | 60S ribosomal protein L13 | polymer | 208 | 23578.1 | 1 | UniProt (O74175) Pfam (PF01294) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 18 | M | 60S ribosomal protein L14 | polymer | 134 | 15241.1 | 1 | UniProt (O94238) Pfam (PF00467) Pfam (PF01929) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 19 | N | 60S ribosomal protein L15-A | polymer | 201 | 23862.6 | 1 | UniProt (O74895) Pfam (PF00827) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 20 | O | 60S ribosomal protein L16-B | polymer | 197 | 22215.3 | 1 | UniProt (O42991) Pfam (PF00572) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 21 | P | 60S ribosomal protein L17-A | polymer | 187 | 20854.1 | 1 | UniProt (O14339) Pfam (PF00237) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 22 | Q | 60S ribosomal protein L18-A | polymer | 187 | 21240.9 | 1 | UniProt (Q10192) Pfam (PF17135) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 23 | S | 60S ribosomal protein L20-A | polymer | 176 | 20642.3 | 1 | UniProt (P0CT68) Pfam (PF01775) In PDB | Schizosaccharomyces pombe (fission yeast) | YL17 |
| 24 | V | 60S ribosomal protein L23-A | polymer | 139 | 14905.5 | 1 | UniProt (P0CT60) Pfam (PF00238) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 25 | Y | Ribosomal protein L26 | polymer | 126 | 14375.9 | 1 | UniProt (U3PYE6) Pfam (PF16906) Pfam (PF00467) UniProt (by SIFTS) (P78946) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 26 | b | Probable nucleolar GTP-binding protein 1 | polymer | 642 | 72915.4 | 1 | UniProt (O94659) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 27 | e | 60S ribosomal protein L32-A | polymer | 127 | 14491.1 | 1 | UniProt (P79015) Pfam (PF01655) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 28 | f | 60S ribosomal protein L33-B | polymer | 108 | 12133.2 | 1 | UniProt (Q9USG6) Pfam (PF01247) In PDB | Schizosaccharomyces pombe (fission yeast) | L37B |
| 29 | h | 60S ribosomal protein L35 | polymer | 122 | 14333.9 | 1 | UniProt (O74904) Pfam (PF00831) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 30 | i | 60S ribosomal protein L36-B | polymer | 99 | 11287.4 | 1 | UniProt (O94658) Pfam (PF01158) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 31 | j | 60S ribosomal protein L37-B | polymer | 91 | 10112.8 | 1 | UniProt (P05733) Pfam (PF01907) In PDB | Schizosaccharomyces pombe (fission yeast) | L37-2,YL27 |
| 32 | m | Ribosome biogenesis protein erb1 | polymer | 740 | 83052.5 | 1 | UniProt (O74399) Pfam (PF08145) Pfam (PF00400) In PDB | Schizosaccharomyces pombe (fission yeast) | Eukaryotic ribosome biogenesis protein 1 |
| 33 | o | Uncharacterized RNA-binding protein C1827.05c | polymer | 276 | 31473.4 | 1 | UniProt (O74978) Pfam (PF00076) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 34 | r | Ribosome biogenesis protein nsa2 | polymer | 260 | 29765.5 | 1 | UniProt (Q9UU79) Pfam (PF01201) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 35 | t | 60S ribosomal protein L7-A | polymer | 249 | 29222.3 | 1 | UniProt (P17937) Pfam (PF08079) Pfam (PF00327) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 36 | u | Ribosome biogenesis protein rlp24 | polymer | 192 | 22323.9 | 1 | UniProt (Q10353) Pfam (PF01246) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 37 | v | Nucleolar protein 16 | polymer | 209 | 23990.5 | 1 | UniProt (Q9Y7Z1) Pfam (PF09420) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 38 | x | Brix domain-containing protein C4F8.04 | polymer | 306 | 35898.9 | 1 | UniProt (O14180) Pfam (PF04427) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 39 | y | Eukaryotic translation initiation factor 6 | polymer | 244 | 26251.4 | 1 | UniProt (O94476) Pfam (PF01912) In PDB | Schizosaccharomyces pombe (fission yeast) | eIF-6 |
| 40 | T | 60S ribosomal protein L21-A | polymer | 160 | 18418.2 | 1 | UniProt (Q9UUC1) Pfam (PF01157) In PDB | Schizosaccharomyces pombe (fission yeast) | |
| 41 | j | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 40 |
| Total formula weight | 2358482.0 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 2358547.4 |
