8DUA
SIV E660.CR54 SOS-2P Env Trimer with ITS92.02
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E, I (B, A, F) | Envelope glycoprotein gp41 | polymer | 148 | 16852.2 | 3 | UniProt (V9PL68) Pfam (PF00517) UniProt (by SIFTS) (P12492) | Simian immunodeficiency virus | |
| 2 | B, F, J (G, C, I) | Envelope glycoprotein gp120 | polymer | 512 | 59053.6 | 3 | UniProt (C4NR77) Pfam (PF00516) UniProt (by SIFTS) (P12492) | Simian immunodeficiency virus | |
| 3 | C, G, K (H, D, J) | ITS92.02 Heavy Chain | polymer | 228 | 24275.3 | 3 | Macaca mulatta | ||
| 4 | D, H, L (L, E, K) | ITS92.02 Light Chain | polymer | 214 | 23398.0 | 3 | Macaca mulatta | ||
| 5 | M, O, R, T, W... (M, O, R, T, W...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
| 6 | AA, N, Q, S, V... (a, N, Q, S, V...) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 6 | In PDB GlyTouCan (G22768VO) | |||
| 7 | P, U, Z (P, U, Z) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
| 8 | AB, BA, BB, CA, DA... (I, B, G, A, C...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 27 | Chemie (NAG) |
Sequence modifications
B, A, F: 513 - 664 (UniProt: V9PL68)
G, C, I: 33 - 514 (UniProt: C4NR77)
| PDB | External Database | Details |
|---|---|---|
| Pro 559 | Val 580 | conflict |
| Pro 569 | Thr 590 | conflict |
| Cys 605 | His 626 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Cys 501 | Val 520 | conflict |
| Arg 512 | Asn 531 | conflict |
| Arg 513 | Lys 532 | conflict |
| Arg 515 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 370737.0 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 11230.2 | |
| Non-Polymers* | Number of molecules | 27 |
| Total formula weight | 5972.6 | |
| All* | Total formula weight | 387939.9 |
