8DT3
Cryo-EM structure of spike binding to Fab of neutralizing antibody (locally refined)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (C) | Spike glycoprotein | polymer | 1281 | 142402.5 | 1 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | B (H) | Heavy chain Fab of SW186 | polymer | 232 | 24450.4 | 1 | Mus musculus (Mouse) | ||
| 3 | C (L) | Light chain Fab of SW186 | polymer | 231 | 25358.1 | 1 | Mus musculus (Mouse) | ||
| 4 | D (T) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) |
Sequence modifications
C: 1 - 1273 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| His 1274 | - | expression tag |
| His 1275 | - | expression tag |
| His 1276 | - | expression tag |
| His 1277 | - | expression tag |
| His 1278 | - | expression tag |
| His 1279 | - | expression tag |
| His 1280 | - | expression tag |
| His 1281 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 192211.0 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 570.5 | |
| All* | Total formula weight | 192781.6 |
