8DMB
Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | P | Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein | polymer | 741 | 84080.9 | 1 | UniProt (Q12306) Pfam (PF00240) In PDB | Saccharomyces cerevisiae S288C | |
2 | W | omega RNA | polymer | 284 | 91748.3 | 1 | Desulfovirgula thermocuniculi | ||
3 | X | target DNA | polymer | 31 | 9593.2 | 1 | synthetic construct | ||
4 | Y | non-target DNA | polymer | 10 | 3075.0 | 1 | synthetic construct | ||
5 | W | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) |
Sequence modifications
P: -98 - -1 (UniProt: Q12306)
P: 1 - 353 (PDB: 8DMB)
P: 354 - 591 (PDB: 8DMB)
PDB | External Database | Details |
---|---|---|
Met -149 | - | initiating methionine |
Gly -148 | - | expression tag |
Ser -147 | - | expression tag |
Ser -146 | - | expression tag |
His -145 | - | expression tag |
His -144 | - | expression tag |
His -143 | - | expression tag |
His -142 | - | expression tag |
His -141 | - | expression tag |
His -140 | - | expression tag |
Ser -139 | - | expression tag |
Ser -138 | - | expression tag |
Gly -137 | - | expression tag |
Leu -136 | - | expression tag |
Val -135 | - | expression tag |
Pro -134 | - | expression tag |
Arg -133 | - | expression tag |
Gly -132 | - | expression tag |
Ser -131 | - | expression tag |
His -130 | - | expression tag |
Met -129 | - | expression tag |
Ala -128 | - | expression tag |
Ser -127 | - | expression tag |
Trp -126 | - | expression tag |
Ser -125 | - | expression tag |
His -124 | - | expression tag |
Pro -123 | - | expression tag |
Gln -122 | - | expression tag |
Phe -121 | - | expression tag |
Glu -120 | - | expression tag |
Lys -119 | - | expression tag |
Gly -118 | - | expression tag |
Gly -117 | - | expression tag |
Gly -116 | - | expression tag |
Ser -115 | - | expression tag |
Gly -114 | - | expression tag |
Gly -113 | - | expression tag |
Gly -112 | - | expression tag |
Ser -111 | - | expression tag |
Gly -110 | - | expression tag |
Gly -109 | - | expression tag |
Ser -108 | - | expression tag |
Ala -107 | - | expression tag |
Trp -106 | - | expression tag |
Ser -105 | - | expression tag |
His -104 | - | expression tag |
Pro -103 | - | expression tag |
Gln -102 | - | expression tag |
Phe -101 | - | expression tag |
Glu -100 | - | expression tag |
Lys -99 | - | expression tag |
Ser 0 | - | linker |
P: 354 - 591 (PDB: 8DMB)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 188497.4 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 48.6 | |
All* | Total formula weight | 188546.0 |