8DEU
Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with CASP peptide complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Efflux pump membrane transporter | polymer | 1067 | 113932.5 | 3 | UniProt (A0A6V7GUB3) Pfam (PF00873) UniProt (by SIFTS) (Q5F725) In PDB | Neisseria gonorrhoeae | |
| 2 | D | CASP peptide | polymer | 9 | 967.1 | 1 | Neisseria gonorrhoeae | ||
| 3 | C, A, B | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 27 | Chemie (PTY) |
Sequence modifications
A, B, C: 1 - 1067 (UniProt: A0A6V7GUB3)
| PDB | External Database | Details |
|---|---|---|
| Val 738 | Ile 738 | conflict |
| Ser 752 | Gly 752 | conflict |
| Ser 757 | Asn 757 | conflict |
| Gly 774 | Ala 774 | conflict |
| Asp 775 | Ser 775 | conflict |
| Ser 850 | Gly 850 | conflict |
| Ile 871 | Leu 871 | conflict |
| Ala 872 | Ile 872 | conflict |
| Ala 875 | Gly 875 | conflict |
| Ala 878 | Val 878 | conflict |
| Val 879 | Ala 879 | conflict |
| Leu 899 | Ile 899 | conflict |
| Met 902 | Ile 902 | conflict |
| Ala 907 | Ile 907 | conflict |
| Phe 919 | Thr 919 | conflict |
| Gly 921 | Leu 921 | conflict |
| Leu 922 | Met 922 | conflict |
| Ser 925 | Gly 925 | conflict |
| Val 926 | Ile 926 | conflict |
| Ser 928 | Ala 928 | conflict |
| Arg 1052 | Lys 1052 | conflict |
| Ser 1055 | Ala 1055 | conflict |
| Lys 1056 | Glu 1056 | conflict |
| Lys 1065 | Ser 1065 | conflict |
| Tyr 1067 | His 1067 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 342764.5 | |
| Non-Polymers* | Number of molecules | 27 |
| Total formula weight | 19819.1 | |
| All* | Total formula weight | 362583.5 |
