8DER
Cryo-EM local refinement of antibody SKV16 in complex with VEEV alphavirus spike glycoprotein
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, I, K (X, H, W) | SKV16 Fab Heavy Chain | polymer | 122 | 13461.1 | 3 | Macaca | ||
| 2 | B, J, L (Y, L, V) | SKV16 Fab Light Chain | polymer | 105 | 11214.4 | 3 | Macaca | ||
| 3 | C, D, F (G, E, F) | Spike glycoprotein E1 | polymer | 402 | 43669.0 | 3 | UniProt (P05674) Pfam (PF01589) | Venezuelan equine encephalitis virus | E1 envelope glycoprotein |
| 4 | E, G, H (C, B, A) | Spike glycoprotein E2 | polymer | 345 | 38574.7 | 3 | UniProt (P05674) Pfam (PF00943) | Venezuelan equine encephalitis virus | E2 envelope glycoprotein |
| 5 | M, N (D, I) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 6 | O (J) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 7 | P, Q, R (G, E, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 320757.5 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1435.3 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 663.6 | |
| All* | Total formula weight | 322856.4 |
