8D5R
Structure of Y430F D-ornithine/D-lysine decarboxylase complex with D-ornithine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | D-ornithine/D-lysine decarboxylase | polymer | 477 | 54047.0 | 2 | UniProt (Q8ZNC4) Pfam (PF00278) Pfam (PF02784) | Salmonella enterica subsp. enterica serovar Typhimurium | D-Orn/D-Lys decarboxylase,DOKDC |
| 2 | C, F, J, N (A, B) | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 4 | Chemie (DMS) | |||
| 3 | D, K (A, B) | N~2~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-D-ORNITHINE | non-polymer | 363.3 | 2 | Chemie (ORX) | |||
| 4 | E, L (A, B) | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) | |||
| 5 | G, O, P (A, B) | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
| 6 | H, Q (A, B) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 7 | I (B) | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 1 | Chemie (PUT) | |||
| 8 | M (B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 9 | R, S (A, B) | water | water | 18.0 | 864 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 465 (UniProt: Q8ZNC4)
| PDB | External Database | Details |
|---|---|---|
| Phe 430 | Tyr 430 | engineered mutation |
| Leu 466 | - | expression tag |
| Ala 467 | - | expression tag |
| Ala 468 | - | expression tag |
| Ala 469 | - | expression tag |
| Leu 470 | - | expression tag |
| Glu 471 | - | expression tag |
| His 472 | - | expression tag |
| His 473 | - | expression tag |
| His 474 | - | expression tag |
| His 475 | - | expression tag |
| His 476 | - | expression tag |
| His 477 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 108094.0 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1447.3 | |
| All* | Total formula weight | 109541.3 |
