8D5N
Crystal structure of Ld-HF10
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (C, A) | H-2 class I histocompatibility antigen, L-D alpha chain | polymer | 282 | 32402.0 | 2 | UniProt (P01897) Pfam (PF00129) Pfam (PF07654) | Mus musculus (Mouse) | |
| 2 | B, D (E, B) | Dense granule protein 6, HF10 peptide | polymer | 16 | 1567.6 | 2 | Toxoplasma gondii | ||
| 3 | E, F (F, H) | Beta-2-microglobulin | polymer | 104 | 11975.6 | 2 | UniProt (P01887) Pfam (PF07654) | Mus musculus (house mouse) | |
| 4 | G, J (C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 5 | H (C) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
| 6 | I (E) | PROPANOIC ACID | non-polymer | 74.1 | 1 | Chemie (PPI) | |||
| 7 | K, L (F, H) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 8 | M, N, O, P, Q... (C, E, A, B, F...) | water | water | 18.0 | 401 | Chemie (HOH) |
Sequence modifications
C, A: 1 - 274 (UniProt: P01897)
F, H: 1 - 99 (UniProt: P01887)
| PDB | External Database | Details |
|---|---|---|
| Cys 84 | Tyr 108 | conflict |
| Ser 121 | Cys 145 | conflict |
| Gln 275 | - | expression tag |
| Ser 276 | - | expression tag |
| Thr 277 | - | expression tag |
| Arg 278 | - | expression tag |
| Gly 279 | - | expression tag |
| Gly 280 | - | expression tag |
| Ala 281 | - | expression tag |
| Ser 282 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 91890.5 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 834.9 | |
| All* | Total formula weight | 92725.4 |
