8CMD
Human Leukocyte Antigen class II allotype DR1 presenting SARS-CoV-2 Spike peptide S761-775
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G (A, D, G) | HLA class II histocompatibility antigen, DR alpha chain | polymer | 183 | 21287.1 | 3 | UniProt (P01903) Pfam (PF00993) Pfam (PF07654) | Homo sapiens (human) | MHC class II antigen DRA |
| 2 | B, E, H (B, E, H) | Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) | polymer | 194 | 22487.2 | 3 | Pfam (PF00969) Pfam (PF07654) UniProt (by SIFTS) (D7RIG0) | Homo sapiens | |
| 3 | C, F, I (C, F, I) | Spike protein S2' | polymer | 15 | 1629.8 | 3 | UniProt (P0DTC2) | Severe acute respiratory syndrome coronavirus 2 | SARS-Cov-2 Spike epitope S761-775 |
| 4 | J, K, L, M, N... (A, B, E, G) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 10 | Chemie (EDO) | |||
| 5 | AA, T, U, V, W... (I, A, B, C, D...) | water | water | 18.0 | 165 | Chemie (HOH) |
Sequence modifications
A, D, G: 1 - 182 (UniProt: P01903)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 136212.2 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 620.7 | |
| All* | Total formula weight | 136832.9 |
