8CIN
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1123 | 124616.3 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, F, G (E, H, J) | BA.4/5-5 fab HEAVY CHAIN | polymer | 223 | 23612.5 | 3 | Homo sapiens | ||
3 | E, H, I (F, K, L) | BA.4/5-5 fab LIGHT CHAIN | polymer | 214 | 22616.1 | 3 | Homo sapiens | ||
4 | J, K, L, M, N... (D, G, I, M, N...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
5 | AA, BA, CA, DA, EA... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 27 | Chemie (NAG) |
Sequence modifications
A, B, C: 25 - 1142 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Thr 22 | - | expression tag |
Gln 23 | - | expression tag |
Ser 24 | - | expression tag |
Asp 137 | Gly 142 | variant |
Asp 334 | Gly 339 | variant |
Phe 366 | Ser 371 | variant |
Pro 368 | Ser 373 | variant |
Phe 370 | Ser 375 | variant |
Ala 371 | Thr 376 | variant |
Asn 400 | Asp 405 | variant |
Ser 403 | Arg 408 | variant |
Asn 412 | Lys 417 | variant |
Lys 435 | Asn 440 | variant |
Arg 447 | Leu 452 | variant |
Asn 472 | Ser 477 | variant |
Lys 473 | Thr 478 | variant |
Ala 479 | Glu 484 | variant |
Val 481 | Phe 486 | variant |
Arg 493 | Gln 498 | variant |
Tyr 496 | Asn 501 | variant |
His 500 | Tyr 505 | variant |
Gly 609 | Asp 614 | variant |
Tyr 650 | His 655 | variant |
Lys 759 | Asn 764 | variant |
Tyr 791 | Asp 796 | variant |
His 949 | Gln 954 | variant |
Lys 964 | Asn 969 | variant |
Pro 981 | Lys 986 | engineered mutation |
Pro 982 | Val 987 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 512534.6 | |
Branched | Number of molecules | 12 |
Total formula weight | 5092.8 | |
Non-Polymers* | Number of molecules | 27 |
Total formula weight | 5972.6 | |
All* | Total formula weight | 523600.0 |