8CGD

Clindamycin bound to the 50S subunit

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	0	Large ribosomal subunit protein bL33	polymer	55	6388.6	1	UniProt (P0A7N9) Pfam (PF00471) In PDB	Escherichia coli BW25113	50S ribosomal protein L33
2	1	Large ribosomal subunit protein bL34	polymer	46	5397.5	1	UniProt (P0A7P5) Pfam (PF00468) In PDB	Escherichia coli BW25113	50S ribosomal protein L34
3	2	Large ribosomal subunit protein bL35	polymer	65	7313.0	1	UniProt (P0A7Q1) Pfam (PF01632) In PDB	Escherichia coli BW25113	50S ribosomal protein L35,Ribosomal protein A
4	3	Large ribosomal subunit protein bL36A	polymer	38	4377.4	1	UniProt (P0A7Q6) Pfam (PF00444) In PDB	Escherichia coli BW25113	50S ribosomal protein L36,Ribosomal protein B
5	a	23S rRNA	polymer	2904	941811.6	1		Escherichia coli BW25113
6	b	5S rRNA	polymer	120	38790.1	1		Escherichia coli BW25113
7	c	Large ribosomal subunit protein uL2	polymer	273	29923.6	1	UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB	Escherichia coli BW25113	50S ribosomal protein L2
8	d	Large ribosomal subunit protein uL3	polymer	209	22291.6	1	UniProt (P60438) Pfam (PF00297) In PDB	Escherichia coli BW25113	50S ribosomal protein L3
9	e	Large ribosomal subunit protein uL4	polymer	201	22121.6	1	UniProt (P60723) Pfam (PF00573) In PDB	Escherichia coli BW25113	50S ribosomal protein L4
10	f	Large ribosomal subunit protein uL5	polymer	179	20333.6	1	UniProt (P62399) Pfam (PF00673) Pfam (PF00281) In PDB	Escherichia coli BW25113	50S ribosomal protein L5
11	g	Large ribosomal subunit protein uL6	polymer	177	18932.8	1	UniProt (P0AG55) Pfam (PF00347) In PDB	Escherichia coli BW25113	50S ribosomal protein L6
12	h	Large ribosomal subunit protein bL9	polymer	149	15789.0	1	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB	Escherichia coli BW25113	50S ribosomal protein L9
13	i	Large ribosomal subunit protein uL13	polymer	142	16050.6	1	UniProt (P0AA10) Pfam (PF00572) In PDB	Escherichia coli BW25113	50S ribosomal protein L13
14	j	Large ribosomal subunit protein uL14	polymer	123	13565.1	1	UniProt (P0ADY3) Pfam (PF00238) In PDB	Escherichia coli BW25113	50S ribosomal protein L14
15	k	50S ribosomal protein L15	polymer	144	15008.5	1	UniProt (P02413) Pfam (PF00828) In PDB	Escherichia coli BW25113	Large ribosomal subunit protein uL15
16	l	Large ribosomal subunit protein uL16	polymer	136	15329.3	1	UniProt (P0ADY7) Pfam (PF00252) In PDB	Escherichia coli BW25113	50S ribosomal protein L16
17	m	Large ribosomal subunit protein bL17	polymer	127	14393.7	1	UniProt (P0AG44) Pfam (PF01196) In PDB	Escherichia coli BW25113	50S ribosomal protein L17
18	n	Large ribosomal subunit protein uL18	polymer	117	12794.7	1	UniProt (P0C018) Pfam (PF00861) In PDB	Escherichia coli BW25113	50S ribosomal protein L18
19	o	Large ribosomal subunit protein bL19	polymer	115	13159.3	1	UniProt (P0A7K6) Pfam (PF01245) In PDB	Escherichia coli BW25113	50S ribosomal protein L19
20	p	Large ribosomal subunit protein bL20	polymer	118	13528.0	1	UniProt (P0A7L3) Pfam (PF00453) In PDB	Escherichia coli BW25113	50S ribosomal protein L20
21	q	Large ribosomal subunit protein bL21	polymer	103	11586.4	1	UniProt (P0AG48) Pfam (PF00829) In PDB	Escherichia coli BW25113	50S ribosomal protein L21
22	r	Large ribosomal subunit protein uL22	polymer	110	12253.4	1	UniProt (P61175) Pfam (PF00237) In PDB	Escherichia coli BW25113	50S ribosomal protein L22
23	s	Large ribosomal subunit protein uL23	polymer	100	11222.2	1	UniProt (P0ADZ0) Pfam (PF00276) In PDB	Escherichia coli BW25113	50S ribosomal protein L23
24	t	Large ribosomal subunit protein uL24	polymer	104	11339.3	1	UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB	Escherichia coli BW25113	50S ribosomal protein L24
25	u	50S ribosomal protein L25	polymer	94	10713.5	1	UniProt (P68919) Pfam (PF01386) In PDB	Escherichia coli BW25113	Large ribosomal subunit protein bL25
26	v	Large ribosomal subunit protein bL27	polymer	85	9146.5	1	UniProt (P0A7L8) Pfam (PF01016) In PDB	Escherichia coli BW25113	50S ribosomal protein L27
27	w	Large ribosomal subunit protein bL28	polymer	78	9027.6	1	UniProt (P0A7M2) Pfam (PF00830) In PDB	Escherichia coli BW25113	50S ribosomal protein L28
28	x	Large ribosomal subunit protein uL29	polymer	63	7286.5	1	UniProt (P0A7M6) Pfam (PF00831) In PDB	Escherichia coli BW25113	50S ribosomal protein L29
29	y	Large ribosomal subunit protein uL30	polymer	59	6554.8	1	UniProt (P0AG51) Pfam (PF00327) In PDB	Escherichia coli BW25113	50S ribosomal protein L30
30	z	Large ribosomal subunit protein bL32	polymer	57	6463.4	1	UniProt (P0A7N4) Pfam (PF01783) In PDB	Escherichia coli BW25113	50S ribosomal protein L32
31	3, f	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
32	a	ACETATE ION	non-polymer		59.0	1	Chemie (ACT)
33	a	CLINDAMYCIN	non-polymer		425.0	1	Chemie (CLY)
34	a	APRAMYCIN	non-polymer		539.6	1	Chemie (AM2)
35	a, d, p, z, b...	MAGNESIUM ION	non-polymer		24.3	254	Chemie (MG)
36	a, c, e, t	POTASSIUM ION	non-polymer		39.1	85	Chemie (K)
37		water	water		18.0	8357	Chemie (HOH)

Sequence modifications

l: 1 - 136 (UniProt: P0ADY7)

PDB	External Database	Details
Ms6 82	Met 82	modified residue

Contents of the asymmetric unit

Polymers	Number of chains	30
	Total formula weight	1342892.9
Non-Polymers*	Number of molecules	344
	Total formula weight	10651.2
All*	Total formula weight	1353544.1

*Water molecules are not included.