8CGD
Clindamycin bound to the 50S subunit
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | Large ribosomal subunit protein bL33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli BW25113 | 50S ribosomal protein L33 |
| 2 | B (1) | Large ribosomal subunit protein bL34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli BW25113 | 50S ribosomal protein L34 |
| 3 | C (2) | Large ribosomal subunit protein bL35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli BW25113 | 50S ribosomal protein L35,Ribosomal protein A |
| 4 | D (3) | Large ribosomal subunit protein bL36A | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli BW25113 | 50S ribosomal protein L36,Ribosomal protein B |
| 5 | E (a) | 23S rRNA | polymer | 2904 | 941811.6 | 1 | Escherichia coli BW25113 | ||
| 6 | F (b) | 5S rRNA | polymer | 120 | 38790.1 | 1 | Escherichia coli BW25113 | ||
| 7 | G (c) | Large ribosomal subunit protein uL2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli BW25113 | 50S ribosomal protein L2 |
| 8 | H (d) | Large ribosomal subunit protein uL3 | polymer | 209 | 22291.6 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli BW25113 | 50S ribosomal protein L3 |
| 9 | I (e) | Large ribosomal subunit protein uL4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli BW25113 | 50S ribosomal protein L4 |
| 10 | J (f) | Large ribosomal subunit protein uL5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00673) Pfam (PF00281) | Escherichia coli BW25113 | 50S ribosomal protein L5 |
| 11 | K (g) | Large ribosomal subunit protein uL6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli BW25113 | 50S ribosomal protein L6 |
| 12 | L (h) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli BW25113 | 50S ribosomal protein L9 |
| 13 | M (i) | Large ribosomal subunit protein uL13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli BW25113 | 50S ribosomal protein L13 |
| 14 | N (j) | Large ribosomal subunit protein uL14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli BW25113 | 50S ribosomal protein L14 |
| 15 | O (k) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli BW25113 | Large ribosomal subunit protein uL15 |
| 16 | P (l) | Large ribosomal subunit protein uL16 | polymer | 136 | 15343.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli BW25113 | 50S ribosomal protein L16 |
| 17 | Q (m) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli BW25113 | 50S ribosomal protein L17 |
| 18 | R (n) | Large ribosomal subunit protein uL18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli BW25113 | 50S ribosomal protein L18 |
| 19 | S (o) | Large ribosomal subunit protein bL19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli BW25113 | 50S ribosomal protein L19 |
| 20 | T (p) | Large ribosomal subunit protein bL20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli BW25113 | 50S ribosomal protein L20 |
| 21 | U (q) | Large ribosomal subunit protein bL21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli BW25113 | 50S ribosomal protein L21 |
| 22 | V (r) | Large ribosomal subunit protein uL22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli BW25113 | 50S ribosomal protein L22 |
| 23 | W (s) | Large ribosomal subunit protein uL23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli BW25113 | 50S ribosomal protein L23 |
| 24 | X (t) | Large ribosomal subunit protein uL24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli BW25113 | 50S ribosomal protein L24 |
| 25 | Y (u) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli BW25113 | Large ribosomal subunit protein bL25 |
| 26 | Z (v) | Large ribosomal subunit protein bL27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli BW25113 | 50S ribosomal protein L27 |
| 27 | AA (w) | Large ribosomal subunit protein bL28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli BW25113 | 50S ribosomal protein L28 |
| 28 | BA (x) | Large ribosomal subunit protein uL29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli BW25113 | 50S ribosomal protein L29 |
| 29 | CA (y) | Large ribosomal subunit protein uL30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli BW25113 | 50S ribosomal protein L30 |
| 30 | DA (z) | Large ribosomal subunit protein bL32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli BW25113 | 50S ribosomal protein L32 |
| 31 | EA, GN (3, f) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 32 | FA (a) | ACETATE ION | non-polymer | 59.0 | 1 | Chemie (ACT) PubChem (175) | |||
| 33 | GA (a) | CLINDAMYCIN | non-polymer | 425.0 | 1 | Chemie (CLY) PubChem (16219134) PubChem (18528738) PubChem (3000512) PubChem (2786) PubChem (176478489) PubChem (176478508) PubChem (177678978) PubChem (25749166) PubChem (441205) PubChem (40469533) PubChem (40480617) PubChem (40768285) PubChem (40768287) PubChem (40768291) PubChem (40768303) PubChem (44119967) PubChem (446598) PubChem (44311075) PubChem (44629925) PubChem (45357041) PubChem (27281318) PubChem (25749162) PubChem (38988504) PubChem (451485) PubChem (40768289) PubChem (46738092) PubChem (46781041) PubChem (46783762) PubChem (969514) PubChem (53245639) PubChem (53384907) PubChem (59060005) PubChem (59098376) PubChem (3032758) PubChem (59660748) PubChem (59660749) PubChem (59755169) PubChem (5702026) PubChem (73265278) PubChem (3001928) PubChem (3034218) PubChem (75534858) PubChem (29029) PubChem (6602476) PubChem (6604361) PubChem (7048642) PubChem (7048644) PubChem (7048646) PubChem (7048648) PubChem (7276018) PubChem (89903937) PubChem (90063025) PubChem (90470545) PubChem (9812677) PubChem (1150196) PubChem (92859108) PubChem (92859109) PubChem (93532246) PubChem (93532247) PubChem (93532857) PubChem (93603126) PubChem (94001648) PubChem (12110762) PubChem (12303634) PubChem (95566284) PubChem (95566285) PubChem (95566354) PubChem (98051930) PubChem (98051931) PubChem (124391318) PubChem (7276016) PubChem (7276014) PubChem (124525933) PubChem (124526498) PubChem (124577523) PubChem (124709427) PubChem (124709428) PubChem (124709429) PubChem (124746139) PubChem (125028855) PubChem (125462839) PubChem (126963533) PubChem (129009913) PubChem (129627692) PubChem (131632849) PubChem (134232214) PubChem (134693960) PubChem (134990828) PubChem (155631032) PubChem (159102520) PubChem (137705123) PubChem (138106572) PubChem (138403270) PubChem (154453692) PubChem (155285995) PubChem (156619893) PubChem (163029744) PubChem (163198909) PubChem (163284952) PubChem (164671898) PubChem (169247049) PubChem (171114713) | |||
| 34 | HA (a) | APRAMYCIN | non-polymer | 539.6 | 1 | Chemie (AM2) PubChem (16757849) PubChem (71428) PubChem (23305085) PubChem (16395964) PubChem (439519) PubChem (44119923) PubChem (23958199) PubChem (44784762) PubChem (45105104) PubChem (52949248) PubChem (57397142) PubChem (53393693) PubChem (71306481) PubChem (71313473) PubChem (73951969) PubChem (6710735) PubChem (92328353) PubChem (92328355) PubChem (89903933) PubChem (3081545) PubChem (96358443) PubChem (96358448) PubChem (92328352) PubChem (92328354) PubChem (96358449) PubChem (96358446) PubChem (102565449) PubChem (6427043) PubChem (6604396) PubChem (122581310) PubChem (6713994) PubChem (124511479) PubChem (124717614) PubChem (124717616) PubChem (10098771) PubChem (118410308) PubChem (118410321) PubChem (134693919) PubChem (134814278) PubChem (124507110) PubChem (124511478) PubChem (124511480) PubChem (124717613) PubChem (124717615) PubChem (12898620) PubChem (137628585) PubChem (138107157) PubChem (126541504) PubChem (126541519) PubChem (126969597) PubChem (129715889) PubChem (131632422) PubChem (134780435) PubChem (134780436) PubChem (155802492) PubChem (162960550) PubChem (162960552) PubChem (164114074) PubChem (137706136) PubChem (140891139) PubChem (145998733) PubChem (171317955) PubChem (162960551) PubChem (172433808) | |||
| 35 | AB, AC, AD, AE, AF... (a, d, p, z, b...) | MAGNESIUM ION | non-polymer | 24.3 | 254 | Chemie (MG) PubChem (888) | |||
| 36 | AI, AJ, AK, AN, BI... (a, c, e, t) | POTASSIUM ION | non-polymer | 39.1 | 85 | Chemie (K) PubChem (813) | |||
| 37 | AO, BO, CO, DO, EO... (n, o, p, q, r...) | water | water | 18.0 | 8357 | Chemie (HOH) |
Sequence modifications
l: 1 - 136 (UniProt: P0ADY7)
| PDB | External Database | Details |
|---|---|---|
| Ms6 82 | Met 82 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 30 |
| Total formula weight | 1342906.9 | |
| Non-Polymers* | Number of molecules | 344 |
| Total formula weight | 10651.2 | |
| All* | Total formula weight | 1353558.1 |
