8CEP
Kasugamycin bound to the 30S body
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA | polymer | 1540 | 499197.9 | 1 | Escherichia coli BW25113 | ||
| 2 | B (D) | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli BW25113 | 30S ribosomal protein S4 |
| 3 | C (E) | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli BW25113 | 30S ribosomal protein S5 |
| 4 | D (F) | Small ribosomal subunit protein bS6, non-modified isoform | polymer | 131 | 15211.1 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli BW25113 | |
| 5 | E (H) | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 1 | UniProt (P0A7W7) Pfam (PF00410) | Escherichia coli BW25113 | 30S ribosomal protein S8 |
| 6 | F (K) | Small ribosomal subunit protein uS11 | polymer | 129 | 13872.0 | 1 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli BW25113 | 30S ribosomal protein S11 |
| 7 | G (L) | Small ribosomal subunit protein uS12 | polymer | 124 | 13814.2 | 1 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli BW25113 | 30S ribosomal protein S12 |
| 8 | H (O) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (P0ADZ4) Pfam (PF00312) | Escherichia coli BW25113 | 30S ribosomal protein S15 |
| 9 | I (P) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli BW25113 | Small ribosomal subunit protein bS16 |
| 10 | J (Q) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli BW25113 | 30S ribosomal protein S17 |
| 11 | K (R) | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 1 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli BW25113 | 30S ribosomal protein S18 |
| 12 | L (T) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli BW25113 | Small ribosomal subunit protein bS20 |
| 13 | M (U) | Small ribosomal subunit protein bS21 | polymer | 71 | 8524.0 | 1 | UniProt (P68679) Pfam (PF01165) | Escherichia coli BW25113 | 30S ribosomal protein S21 |
| 14 | N (a) | 23S rRNA | polymer | 2904 | 941811.6 | 1 | Escherichia coli BW25113 | ||
| 15 | O, P, Q, R, S (V, B, C, G, I) | Capreomycin IA | polymer | 6 | 686.7 | 5 | BIRD (PRD_000193) | Streptomyces californicus | |
| 16 | AC, BC, CC, DC, EC... (A, D, F) | POTASSIUM ION | non-polymer | 39.1 | 25 | Chemie (K) | |||
| 17 | V (A) | (1S,2R,3S,4R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-AMINO-4-{[CARBOXY(IMINO)METHYL]AMINO}-2,3,4,6-TETRADEOXY-ALPHA-D-ARABINO-HEXOPYRANOSIDE | non-polymer | 379.4 | 1 | Chemie (KSG) | |||
| 18 | AA, AB, BA, BB, CA... (A) | MAGNESIUM ION | non-polymer | 24.3 | 54 | Chemie (MG) | |||
| 19 | AD, BD, CD, DD, ED... (K, L, O, P, Q...) | water | water | 18.0 | 1933 | Chemie (HOH) |
Sequence modifications
K: 1 - 129 (UniProt: P0A7R9)
| PDB | External Database | Details |
|---|---|---|
| Ias 119 | Asn 119 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 19 |
| Total formula weight | 1599091.4 | |
| Non-Polymers* | Number of molecules | 80 |
| Total formula weight | 2669.3 | |
| All* | Total formula weight | 1601760.7 |
