8CE3
Crystal structure of MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase V) luminal domain with a Lys329-Ile345 loop truncation, in complex with 3D fragment 2548
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A | polymer | 515 | 58996.9 | 2 | UniProt (Q09328) Pfam (PF15024) | Homo sapiens (human) | Alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase V,GlcNAc-T V,GNT-V,Mannoside acetylglucosaminyltransferase 5,N-acetylglucosaminyl-transferase V |
| 2 | C, D, M, N, O... (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 3 | E (A) | (3~{S})-1-ethanoyl-3-(4-methylphenyl)piperidine-3-carboxylic acid | non-polymer | 261.3 | 1 | Chemie (UE0) | |||
| 4 | F, G, H, I, J... (A, B) | SULFATE ION | non-polymer | 96.1 | 13 | Chemie (SO4) | |||
| 5 | X, Y (A, B) | water | water | 18.0 | 349 | Chemie (HOH) |
Sequence modifications
A, B: 214 - 728 (UniProt: Q09328)
| PDB | External Database | Details |
|---|---|---|
| - | Lys 329 | deletion |
| - | Lys 330 | deletion |
| - | Val 331 | deletion |
| - | Val 332 | deletion |
| - | Gly 333 | deletion |
| - | Asn 334 | deletion |
| - | Arg 335 | deletion |
| - | Ser 336 | deletion |
| - | Gly 337 | deletion |
| - | Cys 338 | deletion |
| - | Pro 339 | deletion |
| - | Thr 340 | deletion |
| - | Val 341 | deletion |
| Gly 330 | Asp 343 | conflict |
| Gly 331 | Arg 344 | conflict |
| Gly 332 | Ile 345 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 117993.8 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 1944.6 | |
| All* | Total formula weight | 119938.4 |
