8CBF
SARS-CoV-2 Delta-RBD complexed with Omi-42 and Beta-49 Fabs
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | E | Spike protein S1 | polymer | 202 | 22935.7 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | B | Beta-49 light chain | polymer | 216 | 23566.1 | 1 | Homo sapiens | ||
| 3 | A | Beta-49 heavy chain | polymer | 223 | 23431.4 | 1 | Homo sapiens | ||
| 4 | L | Omi-42 light chain | polymer | 215 | 22630.0 | 1 | Homo sapiens | ||
| 5 | H | Omi-42 heavy chain | polymer | 230 | 24381.3 | 1 | Homo sapiens | ||
| 6 | C | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1219.1 | 1 | In PDB GlyTouCan (G99801SM) | |||
| 7 | E | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 8 | B | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 9 | A | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 10 | water | water | 18.0 | 236 | Chemie (HOH) |
Sequence modifications
E: 333 - 526 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| His 327 | - | expression tag |
| His 328 | - | expression tag |
| His 329 | - | expression tag |
| His 330 | - | expression tag |
| His 331 | - | expression tag |
| His 332 | - | expression tag |
| Arg 452 | Leu 452 | variant |
| Lys 478 | Thr 478 | variant |
| Lys 527 | - | expression tag |
| Lys 528 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 116944.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 1219.1 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 407.8 | |
| All* | Total formula weight | 118571.4 |
