8BRN
Crystal structure of red kidney bean purple acid phosphatase in complex with an alpha-aminonaphthylmethylphosphonic acid inhibitor
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D | Fe(3+)-Zn(2+) purple acid phosphatase | polymer | 428 | 49770.6 | 4 | UniProt (P80366) Pfam (PF16656) Pfam (PF00149) Pfam (PF14008) In PDB | Phaseolus vulgaris | PAP,Iron(III)-zinc(II) purple acid phosphatase |
| 2 | E, K, Q | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 3 | F | alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB | |||
| 4 | G, I, N, P, S... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 6 | In PDB GlyTouCan (G18638YB) | |||
| 5 | H, J | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 2 | In PDB GlyTouCan (G43648DB) | |||
| 6 | L | alpha-D-mannopyranose-(1-2)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 1 | In PDB GlyTouCan (G17538MY) | |||
| 7 | M | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 8 | O | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G79924RM) | |||
| 9 | R | beta-D-mannopyranose-(5-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 1 | ||||
| 10 | T | alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G80587NA) | |||
| 11 | B, C, D, A | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 12 | B, C, D, A | FE (III) ION | non-polymer | 55.8 | 4 | Chemie (FE) | |||
| 13 | B, C, D, A | CITRATE ANION | non-polymer | 189.1 | 13 | Chemie (FLC) | |||
| 14 | A, B, C, D | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 6 | Chemie (PGE) | |||
| 15 | A, D, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
| 16 | D, A, B, C | SULFATE ION | non-polymer | 96.1 | 32 | Chemie (SO4) | |||
| 17 | D, A, B, C | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 18 | B, C, D, A | GLYCEROL | non-polymer | 92.1 | 50 | Chemie (GOL) | |||
| 19 | B, C, D, A | CHLORIDE ION | non-polymer | 35.5 | 6 | Chemie (CL) | |||
| 20 | A, B, C, D | [(R)-(decanoylamino)-naphthalen-1-yl-methyl]phosphonic acid | non-polymer | 391.4 | 5 | Chemie (R9X) | |||
| 21 | B | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 22 | D | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 1 | Chemie (DMS) | |||
| 23 | water | water | 18.0 | 2663 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 199082.4 | |
| Branched | Number of molecules | 17 |
| Total formula weight | 11846.0 | |
| Non-Polymers* | Number of molecules | 131 |
| Total formula weight | 15148.4 | |
| All* | Total formula weight | 226076.8 |
