8BEC
Crystal structure of the SARS-CoV-2 S RBD in complex with pT1375 scFV
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C | pT1375 single-chain Fv | polymer | 251 | 26394.2 | 2 | Homo sapiens (human) | pT1375 scFV | |
| 2 | B, D | Spike protein S1 | polymer | 199 | 22361.9 | 2 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 3 | E | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G22573RC) | |||
| 4 | F | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G82348BZ) | |||
| 5 | D | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 6 | water | water | 18.0 | 499 | Chemie (HOH) |
Sequence modifications
B, D: 334 - 527 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asp 528 | - | expression tag |
| Asp 529 | - | expression tag |
| Asp 530 | - | expression tag |
| Asp 531 | - | expression tag |
| Lys 532 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 97512.3 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1805.6 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 96.1 | |
| All* | Total formula weight | 99414.0 |
