8B79
The crystal structure of M644G variant of DNA Pol Epsilon containing UTP in the polymerase active site
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | DNA polymerase epsilon catalytic subunit A | polymer | 1191 | 137101.5 | 2 | UniProt (P21951) Pfam (PF03104) Pfam (PF22634) In PDB | Saccharomyces cerevisiae (baker's yeast) | 3'-5' exodeoxyribonuclease,DNA polymerase II subunit A |
2 | C, P | Primer DNA sequence | polymer | 11 | 3293.2 | 2 | synthetic construct | ||
3 | D, T | Template DNA Sequence | polymer | 16 | 4898.2 | 2 | synthetic construct | ||
4 | A, B | URIDINE 5'-TRIPHOSPHATE | non-polymer | 484.1 | 2 | Chemie (UTP) | |||
5 | A, B | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
6 | A, B | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) | |||
7 | water | water | 18.0 | 12 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 1186 (UniProt: P21951)
PDB | External Database | Details |
---|---|---|
Gly -4 | - | expression tag |
Gly -3 | - | expression tag |
Asp -2 | - | expression tag |
Pro -1 | - | expression tag |
His 0 | - | expression tag |
Gly 644 | Met 644 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 290585.6 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 1326.8 | |
All* | Total formula weight | 291912.5 |