Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8B6C

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1T60S ribosomal protein L21polymer15918478.81UniProt (G1SHQ2)
Pfam (PF01157)
In PDB		Oryctolagus cuniculus (rabbit)
2528S rRNApolymer48081557700.91Oryctolagus cuniculus
3F60S ribosomal protein L7polymer22526658.81UniProt (G1SV32)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Oryctolagus cuniculus (rabbit)
4DRibosomal_L18_c domain-containing proteinpolymer29334077.41UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB		Oryctolagus cuniculus (rabbit)
5S60S ribosomal protein L18apolymer17620827.61Pfam (PF01775)
UniProt (by SIFTS) (G1TTY7)
In PDB		Oryctolagus cuniculus (rabbit)
6b60S ribosomal protein L29polymer24526708.71UniProt (G1SGR6)
Pfam (PF01779)
In PDB		Oryctolagus cuniculus (rabbit)
7BRibosomal protein L3polymer39445119.81UniProt (G1TL06)
Pfam (PF00297)
In PDB		Oryctolagus cuniculus (rabbit)
8d60S ribosomal protein L31polymer10712635.71UniProt (G1SHG0)
Pfam (PF01198)
In PDB		Oryctolagus cuniculus (rabbit)
985.8S rRNApolymer15650143.61GenBank (4CXE_3)Oryctolagus cuniculus (rabbit)
10G60S ribosomal protein L7apolymer31936221.51UniProt (G1STW0)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)
11J60S ribosomal protein L11polymer17019399.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Oryctolagus cuniculus (rabbit)
12c60S ribosomal protein L30polymer9810914.81UniProt (G1TDL2)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)
13jRibosomal protein L37polymer8610090.91UniProt (U3KPD5)
Pfam (PF01907)
In PDB		Oryctolagus cuniculus (rabbit)
14ARibosomal protein L8polymer25728088.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Oryctolagus cuniculus (rabbit)
15IRibosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB		Oryctolagus cuniculus (rabbit)
16qProtein transport protein Sec61 subunit gammapolymer687752.31UniProt (G1TPE6)
Pfam (PF00584)
In PDB		Oryctolagus cuniculus (Rabbit)
17p60S ribosomal protein L37apolymer9110168.21UniProt (G1SY53)
Pfam (PF01780)
In PDB		Oryctolagus cuniculus (rabbit)
18V60S ribosomal protein L23polymer13113972.41UniProt (G1T6D1)
Pfam (PF00238)
In PDB		Oryctolagus cuniculus (rabbit)
19m60S ribosomal protein L40polymer526212.61UniProt (by SIFTS) (P0DXC2)
In PDB		Oryctolagus cuniculus (rabbit)
20l60S ribosomal protein L39-likepolymer506324.61UniProt (G1TTN1)
Pfam (PF00832)
In PDB		Oryctolagus cuniculus (rabbit)
21P60S ribosomal protein L17polymer15317758.71UniProt (G1SCJ6)
Pfam (PF00237)
In PDB		Oryctolagus cuniculus (rabbit)
22E60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB		Oryctolagus cuniculus (rabbit)
23QeL18polymer18821699.71UniProt (F6QKI9)
Pfam (PF17135)
UniProt (by SIFTS) (G1TFE0)
In PDB		Oryctolagus cuniculus (rabbit)
24R60S ribosomal protein L19polymer19623535.31Pfam (PF01280)
UniProt (by SIFTS) (G1TYL6)
In PDB		Oryctolagus cuniculus (rabbit)
25WRibosomal protein L24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB		Oryctolagus cuniculus (rabbit)
26O60S ribosomal protein L13apolymer20323533.31UniProt (by SIFTS) (G1TVS8)
In PDB		Oryctolagus cuniculus (rabbit)
27KProtein transport protein Sec61 subunit alpha isoform 1polymer47652279.41Pfam (PF10559)
Pfam (PF00344)
UniProt (by SIFTS) (A0A5F9CHB7)
In PDB		Oryctolagus cuniculus (rabbit)
28C60S ribosomal protein L4polymer36241114.41UniProt (A0A5F9DCT1)
Pfam (PF00573)
Pfam (PF14374)
UniProt (by SIFTS) (G1SVW5)
In PDB		Oryctolagus cuniculus (rabbit)
29o60S ribosomal protein L36a-likepolymer10312070.51UniProt (G1U344)
Pfam (PF00935)
UniProt (by SIFTS) (G1T040)
In PDB		Oryctolagus cuniculus (rabbit)
30r60S ribosomal protein L28polymer12414220.71UniProt (G1U7L1)
Pfam (PF01778)
In PDB		Oryctolagus cuniculus (rabbit)
31f60S ribosomal protein L35apolymer10912449.61UniProt (G1SF08)
Pfam (PF01247)
In PDB		Oryctolagus cuniculus (rabbit)
32eRibosomal protein L32polymer12815022.01UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
In PDB		Oryctolagus cuniculus (rabbit)
33Z60S ribosomal protein L27polymer13515704.61UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Oryctolagus cuniculus (rabbit)
34a60S ribosomal protein L27apolymer14716489.41UniProt (G1SNY0)
Pfam (PF00828)
In PDB		Oryctolagus cuniculus (rabbit)
35g60S ribosomal protein L34polymer11412994.61UniProt (G1TXG5)
Pfam (PF01199)
In PDB		Oryctolagus cuniculus (rabbit)
36k60S ribosomal protein L38polymer708238.91UniProt (G1U001)
Pfam (PF01781)
In PDB		Oryctolagus cuniculus (rabbit)
37H60S ribosomal protein L9polymer19021627.21UniProt (G1SWI6)
Pfam (PF00347)
In PDB		Oryctolagus cuniculus (rabbit)
38L60S ribosomal protein L13polymer21124331.71UniProt (G1TKB3)
Pfam (PF01294)
In PDB		Oryctolagus cuniculus (rabbit)
3975S rRNApolymer12038691.91GenBank (4CXE_4)Oryctolagus cuniculus (rabbit)
40NRibosomal protein L15polymer20324076.11UniProt (G1T0C1)
Pfam (PF00827)
In PDB		Oryctolagus cuniculus (rabbit)
41i60S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB		Oryctolagus cuniculus (rabbit)
42h60S ribosomal protein L35polymer12214435.41UniProt (G1SIT5)
Pfam (PF00831)
In PDB		Oryctolagus cuniculus (rabbit)
43M60S ribosomal protein L14polymer13816217.41UniProt (G1SZ12)
Pfam (PF01929)
In PDB		Oryctolagus cuniculus (rabbit)
44YRibosomal protein L26polymer13415891.81UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Oryctolagus cuniculus (rabbit)
45XRibosomal_L23eN domain-containing proteinpolymer11813727.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Oryctolagus cuniculus (rabbit)
46U60S ribosomal protein L22 (Fragment)polymer9911495.31Pfam (PF01776)
UniProt (by SIFTS) (G1TSG1)
In PDB		Oryctolagus cuniculus (rabbit)
47n60S ribosomal protein L41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB		Oryctolagus cuniculus (rabbit)
485, 8, A, I, V...MAGNESIUM IONnon-polymer24.3178Chemie (MG)
49j, p, m, o, gZINC IONnon-polymer65.45Chemie (ZN)
50K4-[[9-(cyclohexylmethyl)-3-methylidene-5-(4-methylphenyl)sulfonyl-1,5,9-triazacyclododec-1-yl]sulfonyl]-~{N},~{N}-dimethyl-anilinenon-polymer616.91Chemie (OWI)
Sequence modifications
G: 1 - 319 (UniProt: G1STW0)
PDBExternal DatabaseDetails
Gly 244Cys 244conflict
Q: 1 - 188 (UniProt: F6QKI9)
PDBExternal DatabaseDetails
Arg 134Cys 134conflict
k: 1 - 70 (UniProt: G1U001)
PDBExternal DatabaseDetails
Lys 24Asn 24conflict
L: 1 - 211 (UniProt: G1TKB3)
PDBExternal DatabaseDetails
Arg 74His 74conflict
Arg 190His 190conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains47
Total formula weight2500335.7
Non-Polymers*Number of molecules184
Total formula weight5270.2
All*Total formula weight2505605.9
*Water molecules are not included.

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon