8AMS
Complex of human TRIM2 RING domain, UBCH5C, and Ubiquitin
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Ubiquitin-conjugating enzyme E2 D3 | polymer | 149 | 16955.4 | 2 | UniProt (P61077) Pfam (PF00179) In PDB | Homo sapiens (human) | (E3-independent) E2 ubiquitin-conjugating enzyme D3,E2 ubiquitin-conjugating enzyme D3,Ubiquitin carrier protein D3,Ubiquitin-conjugating enzyme E2(17)KB 3,Ubiquitin-conjugating enzyme E2-17 kDa 3,Ubiquitin-protein ligase D3 |
2 | C, D | Tripartite motif-containing protein 2 | polymer | 153 | 16914.5 | 2 | UniProt (Q9C040) Pfam (PF13445) Pfam (PF00643) In PDB | Homo sapiens (human) | E3 ubiquitin-protein ligase TRIM2,RING finger protein 86,RING-type E3 ubiquitin transferase TRIM2 |
3 | E | Polyubiquitin-C | polymer | 101 | 11639.2 | 1 | UniProt (P0CG48) Pfam (PF00240) In PDB | Homo sapiens (human) | |
4 | A, B, C, D | GLYCEROL | non-polymer | 92.1 | 9 | Chemie (GOL) | |||
5 | C, D | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
6 | D | 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL | non-polymer | 370.4 | 1 | Chemie (PE8) | |||
7 | water | water | 18.0 | 158 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 147 (UniProt: P61077)
C, D: 8 - 157 (UniProt: Q9C040)
E: 0 - 76 (UniProt: P0CG48)
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
His 0 | - | expression tag |
Arg 22 | Ser 22 | engineered mutation |
Ser 85 | Cys 85 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Gly 5 | - | expression tag |
Ala 6 | - | expression tag |
Met 7 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -24 | - | initiating methionine |
Lys -23 | - | expression tag |
His -22 | - | expression tag |
His -21 | - | expression tag |
His -20 | - | expression tag |
His -19 | - | expression tag |
His -18 | - | expression tag |
His -17 | - | expression tag |
Pro -16 | - | expression tag |
Met -15 | - | expression tag |
Ser -14 | - | expression tag |
Asp -13 | - | expression tag |
Tyr -12 | - | expression tag |
Asp -11 | - | expression tag |
Ile -10 | - | expression tag |
Pro -9 | - | expression tag |
Thr -8 | - | expression tag |
Thr -7 | - | expression tag |
Glu -6 | - | expression tag |
Asn -5 | - | expression tag |
Leu -4 | - | expression tag |
Tyr -3 | - | expression tag |
Phe -2 | - | expression tag |
Gln -1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 79379.0 | |
Non-Polymers* | Number of molecules | 14 |
Total formula weight | 1460.9 | |
All* | Total formula weight | 80839.9 |