8AMS
Complex of human TRIM2 RING domain, UBCH5C, and Ubiquitin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-26 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.967700 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.120, 69.270, 151.870 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.920 - 2.400 |
R-factor | 0.215 |
Rwork | 0.214 |
R-free | 0.23260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | RING domain of TRIM2 Ubiquitin |
RMSD bond length | 0.012 |
RMSD bond angle | 1.678 |
Data reduction software | XDS (Jan 10, 2022) |
Data scaling software | XDS (Jan 10, 2022) |
Phasing software | PHENIX (1.20.1_4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.920 | 2.377 |
High resolution limit [Å] | 2.295 | 2.295 |
Number of reflections | 32226 | 2629 |
<I/σ(I)> | 14.54 | |
Completeness [%] | 97.5 | |
Redundancy | 12.7 | |
CC(1/2) | 0.993 | 0.549 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293.15 | 0.2 M sodium formate, 0.1 M bis-tris propane, 20% PEG 3350 |