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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8AM9

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1050S ribosomal protein L33polymer556388.61UniProt (A0A2D0APZ6)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli BW25113
2150S ribosomal protein L34polymer465397.51UniProt (A0A8X6EVB8)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli BW25113
3250S ribosomal protein L35polymer657313.01UniProt (A0A8S0FT45)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli BW25113
4350S ribosomal protein L36polymer384377.41UniProt (A0A2X1PTA3)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli BW25113
5450S ribosomal protein L31polymer707887.11UniProt (C3SIV2)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli BW25113
6B16S ribosomal RNApolymer1534497405.01Escherichia coli BW25113
7C30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS2
8D30S ribosomal protein S3polymer23326031.31UniProt (A0A3S7D3V3)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli BW25113
9E30S ribosomal protein S4polymer20623514.21UniProt (C3SR62)
Pfam (PF01479)
Pfam (PF00163)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli BW25113
10F30S ribosomal protein S5polymer16717629.41UniProt (A0A5V7D7L3)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli BW25113
11G30S ribosomal protein S6, fully modified isoformpolymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli BW25113
12H30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS7
13I30S ribosomal protein S8polymer13014146.61UniProt (A0A829CDV3)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli BW25113
14J30S ribosomal protein S9polymer13014886.31UniProt (A0A8E2LXD9)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli BW25113
15K30S ribosomal protein S10polymer10311755.61UniProt (A0A836N8P1)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli BW25113
16L30S ribosomal protein S11polymer12913871.01UniProt (A0A7U9G2M1)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli BW25113
17M30S ribosomal protein S12polymer12413768.21UniProt (A0A0K0HEP7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli BW25113
18N30S ribosomal protein S13polymer11813128.51UniProt (C3SR52)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli BW25113
19O30S ribosomal protein S14polymer10111606.61UniProt (A0A2S8DCV7)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli BW25113
20P30S ribosomal protein S15polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli BW25113
21Q30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS16
22R30S ribosomal protein S17polymer849724.51UniProt (E3GBX2)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli BW25113
23S30S ribosomal protein S18polymer759005.51UniProt (A0A7L6DXG2)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli BW25113
24T30S ribosomal protein S19polymer9210455.41UniProt (A0A829ADD3)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli BW25113
25U30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS20
26V30S ribosomal protein S21polymer718524.01UniProt (E9TH65)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli BW25113
27a23S ribosomal RNApolymer2903941477.41Escherichia coli BW25113
28b5S ribosomal RNApolymer12038790.11Escherichia coli BW25113
29c50S ribosomal protein L2polymer27329923.61UniProt (A0A7L6YWH1)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60422)
In PDB		Escherichia coli BW25113
30d50S ribosomal protein L3polymer20922291.61UniProt (C3SQU2)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli BW25113
31e50S ribosomal protein L4polymer20122121.61UniProt (D8A1N0)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli BW25113
32f50S ribosomal protein L5polymer17920333.61UniProt (D6IEK6)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli BW25113
33g50S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli BW25113
34h50S ribosomal protein L9polymer14915789.01UniProt (C3SFP2)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli BW25113
35i50S ribosomal protein L13polymer14216050.61UniProt (A0A656YGQ7)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli BW25113
36j50S ribosomal protein L14polymer12313565.11UniProt (C3SQZ2)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli BW25113
37k50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL15
38l50S ribosomal protein L16polymer13615312.31UniProt (A0A0H3EMH6)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli BW25113
39m50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3JBW6)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli BW25113
40n50S ribosomal protein L18polymer11712794.71UniProt (A0A514EKV0)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli BW25113
41o50S ribosomal protein L19polymer11513159.31UniProt (A0A370V6W8)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli BW25113
42p50S ribosomal protein L20polymer11813528.01UniProt (A0A378BCJ4)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli BW25113
43q50S ribosomal protein L21polymer10311586.41UniProt (A0A0E2L2H1)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli BW25113
44r50S ribosomal protein L22polymer11012253.41UniProt (A0A0F6B7N1)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli BW25113
45s50S ribosomal protein L23polymer10011222.21UniProt (D7Y3D8)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli BW25113
46t50S ribosomal protein L24polymer10411339.31UniProt (S1E9P3)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (P60624)
In PDB		Escherichia coli BW25113
47u50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL25
48v50S ribosomal protein L27polymer859146.51UniProt (C3SSG7)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli BW25113
49w50S ribosomal protein L28polymer789027.61UniProt (C3SME2)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli BW25113
50x50S ribosomal protein L29polymer637286.51UniProt (C3SQY2)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli BW25113
51y50S ribosomal protein L30polymer596554.81UniProt (C3SR32)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli BW25113
52z50S ribosomal protein L32polymer576463.41UniProt (A0A657HW13)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli BW25113
53XmRNApolymer123815.31Escherichia coli BW25113
54YInitiator tRNApolymer7624541.71Escherichia coli BW25113
558Leucine tRNApolymer8527424.41Escherichia coli BW25113
56ADrosocin1polymer192204.61UniProt (B4MNS1)
UniProt (by SIFTS) (P36193)
In PDB
BIRD (PRD_002425)		Drosophila melanogaster (fruit fly)
573, 4ZINC IONnon-polymer65.42Chemie (ZN)
58B, a, O, R, b...MAGNESIUM IONnon-polymer24.3293Chemie (MG)
59aSPERMINEnon-polymer202.31Chemie (SPM)
60A2-acetamido-2-deoxy-alpha-D-galactopyranosenon-polymer221.21Chemie (A2G)
61waterwater18.02Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight2195637.7
Non-Polymers*Number of molecules297
Total formula weight7675.7
All*Total formula weight2203313.4
*Water molecules are not included.

222036

PDB entries from 2024-07-03

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