8AEZ
X-ray structure of the deglycosylated receptor binding domain of Env glycoprotein of Simian Foamy virus
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Envelope glycoprotein gp130 | polymer | 340 | 40288.6 | 1 | UniProt (K7YEW5) Pfam (PF03408) In PDB | Simian foamy virus | Env polyprotein |
| 2 | B | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | C | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 1 | In PDB GlyTouCan (G83582BK) | |||
| 4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
| 5 | water | water | 18.0 | 31 | Chemie (HOH) |
Sequence modifications
A: 218 - 552 (UniProt: K7YEW5)
| PDB | External Database | Details |
|---|---|---|
| Asp 553 | - | expression tag |
| Asp 554 | - | expression tag |
| Asp 555 | - | expression tag |
| Asp 556 | - | expression tag |
| Lys 557 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 40288.6 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1983.8 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 1106.0 | |
| All* | Total formula weight | 43378.4 |
