7ZKP
Late assembly intermediate of the proximal proton pumping module of complex I with assembly factors NDUFAF1 and CIA84
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (D) | Subunit NIMM of NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 87 | 9806.2 | 1 | UniProt (A0A1D8NC63) Pfam (PF15879) UniProt (by SIFTS) (B5FVD3) | Yarrowia lipolytica | |
| 2 | B (L) | NADH-ubiquinone oxidoreductase chain 4L | polymer | 89 | 9843.9 | 1 | UniProt (S5U4U1) Pfam (PF00420) UniProt (by SIFTS) (Q9B6D4) | Yarrowia lipolytica | |
| 3 | C (U) | Subunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 172 | 19355.2 | 1 | UniProt (A0A371C2D0) Pfam (PF06747) UniProt (by SIFTS) (Q6CGB4) | Yarrowia lipolytica | |
| 4 | D (W) | Subunit NB6M of NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 123 | 14112.4 | 1 | UniProt (A0A1H6PPE5) Pfam (PF06212) UniProt (by SIFTS) (B5FVF8) | Yarrowia lipolytica | |
| 5 | E (X) | NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit-domain-containing protein | polymer | 169 | 18588.2 | 1 | UniProt (A0A1D8NKB4) Pfam (PF10785) Pfam (PF12853) UniProt (by SIFTS) (Q6C4A6) | Yarrowia lipolytica | |
| 6 | F (1) | NADH-ubiquinone oxidoreductase chain 1 | polymer | 341 | 38389.3 | 1 | UniProt (S5U3V2) Pfam (PF00146) UniProt (by SIFTS) (Q9B6E8) | Yarrowia lipolytica | |
| 7 | G (2) | NADH dehydrogenase subunit 2 | polymer | 469 | 53381.4 | 1 | UniProt (S5U4R9) Pfam (PF00361) UniProt (by SIFTS) (Q9B6C8) | Yarrowia lipolytica | |
| 8 | H (3) | NADH-ubiquinone oxidoreductase chain 3 | polymer | 128 | 14506.3 | 1 | UniProt (S5TMS4) Pfam (PF00507) UniProt (by SIFTS) (Q9B6C7) | Yarrowia lipolytica | |
| 9 | I (6) | NADH-ubiquinone oxidoreductase chain 6 | polymer | 185 | 20793.1 | 1 | UniProt (S5U3X7) Pfam (PF00499) UniProt (by SIFTS) (Q9B6E9) | Yarrowia lipolytica | |
| 10 | J (g) | subunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 78 | 8992.2 | 1 | UniProt (A0A1D8NJR0) UniProt (by SIFTS) (B5FVF3) | Yarrowia lipolytica | |
| 11 | K (b) | Subunit NEBM of NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 74 | 8059.4 | 1 | UniProt (A0A1D8NGI5) | Yarrowia lipolytica | |
| 12 | L (9) | Subunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I) | polymer | 89 | 10035.7 | 1 | UniProt (A0A1D8NNZ0) Pfam (PF10200) UniProt (by SIFTS) (B5RSL7) | Yarrowia lipolytica | |
| 13 | M (C) | assembly factor CIA84 | polymer | 852 | 97098.5 | 1 | UniProt (A0A1D8N612) UniProt (by SIFTS) (Q6CG31) | Yarrowia lipolytica | |
| 14 | N (A) | CIA30 domain-containing protein | polymer | 290 | 32630.0 | 1 | UniProt (A0A1D8NEL0) Pfam (PF08547) | Yarrowia lipolytica | |
| 15 | O, R (X, g) | CARDIOLIPIN | non-polymer | 1464.0 | 2 | Chemie (CDL) | |||
| 16 | P (1) | DIUNDECYL PHOSPHATIDYL CHOLINE | non-polymer | 622.8 | 1 | Chemie (PLC) | |||
| 17 | Q (2) | 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 758.1 | 1 | Chemie (CPL) | |||
| 18 | S (g) | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 1 | Chemie (3PE) | |||
| 19 | T (b) | Phosphatidylinositol | non-polymer | 887.1 | 1 | Chemie (T7X) |
Sequence modifications
6: 2 - 185 (UniProt: S5U3X7)
A: -5 - 237 (UniProt: A0A1D8NEL0)
| PDB | External Database | Details |
|---|---|---|
| Fme 1 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Glu 238 | - | expression tag |
| Asn 239 | - | expression tag |
| Leu 240 | - | expression tag |
| Tyr 241 | - | expression tag |
| Phe 242 | - | expression tag |
| Gln 243 | - | expression tag |
| Gly 244 | - | expression tag |
| Ala 245 | - | expression tag |
| Glu 246 | - | expression tag |
| Ala 247 | - | expression tag |
| Ala 248 | - | expression tag |
| Ala 249 | - | expression tag |
| Lys 250 | - | expression tag |
| Glu 251 | - | expression tag |
| Ala 252 | - | expression tag |
| Ala 253 | - | expression tag |
| Ala 254 | - | expression tag |
| Lys 255 | - | expression tag |
| Ala 256 | - | expression tag |
| Trp 257 | - | expression tag |
| Ser 258 | - | expression tag |
| His 259 | - | expression tag |
| Pro 260 | - | expression tag |
| Gln 261 | - | expression tag |
| Phe 262 | - | expression tag |
| Glu 263 | - | expression tag |
| Lys 264 | - | expression tag |
| Gly 265 | - | expression tag |
| Gly 266 | - | expression tag |
| Gly 267 | - | expression tag |
| Ser 268 | - | expression tag |
| Gly 269 | - | expression tag |
| Gly 270 | - | expression tag |
| Gly 271 | - | expression tag |
| Ser 272 | - | expression tag |
| Gly 273 | - | expression tag |
| Gly 274 | - | expression tag |
| Ser 275 | - | expression tag |
| Ala 276 | - | expression tag |
| Trp 277 | - | expression tag |
| Ser 278 | - | expression tag |
| His 279 | - | expression tag |
| Pro 280 | - | expression tag |
| Gln 281 | - | expression tag |
| Phe 282 | - | expression tag |
| Glu 283 | - | expression tag |
| Lys 284 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 14 |
| Total formula weight | 355591.7 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 5944.2 | |
| All* | Total formula weight | 361535.9 |
