7ZIP
JC Polyomavirus VP1 in complex with 3'-Sialyllactose glycomacromolecules (aliphatic linker)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E (AAA, BBB, CCC, DDD, EEE) | Major capsid protein VP1 | polymer | 275 | 30261.0 | 5 | UniProt (P03088) Pfam (PF00718) | Betapolyomavirus hominis | Major structural protein VP1 |
| 2 | F (DaD) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 633.6 | 1 | In PDB BIRD (PRD_002415) GlyTouCan (G91237TK) | |||
| 3 | G, H, I, J, K (AAA, BBB, CCC, DDD, EEE) | water | water | 18.0 | 816 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE: 30 - 300 (UniProt: P03088)
| PDB | External Database | Details |
|---|---|---|
| Gly 26 | - | expression tag |
| Ser 27 | - | expression tag |
| His 28 | - | expression tag |
| Met 29 | - | expression tag |
| Asp 157 | Glu 158 | variant |
| Thr 170 | Ser 171 | variant |
| Thr 218 | Ala 219 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 151305.2 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 633.6 | |
| All* | Total formula weight | 151938.7 |
