7ZF3
SARS-CoV-2 Omicron RBD in complex with Omi-3 and EY6A Fabs
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H | EY6A heavy chain | polymer | 226 | 24318.3 | 1 | Homo sapiens (human) | ||
2 | L | EY6A light chain | polymer | 215 | 23315.9 | 1 | Homo sapiens (human) | ||
3 | A | Omi-3 heavy chain | polymer | 223 | 23634.5 | 1 | Homo sapiens (human) | ||
4 | B | Omi-3 light chain | polymer | 216 | 23466.9 | 1 | Homo sapiens (human) | ||
5 | E | Spike protein S1 | polymer | 202 | 23157.2 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | SARS-CoV-2 Omicron Spike protein, RBD, Spike protein receptor binding domain |
6 | L, A, E | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
7 | A | ISOPROPYL ALCOHOL | non-polymer | 60.1 | 2 | Chemie (IPA) |
Sequence modifications
E: 333 - 526 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
His 327 | - | expression tag |
His 328 | - | expression tag |
His 329 | - | expression tag |
His 330 | - | expression tag |
His 331 | - | expression tag |
His 332 | - | expression tag |
Asp 339 | Gly 339 | variant |
Leu 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Ser 446 | Gly 446 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Arg 493 | Gln 493 | variant |
Ser 496 | Gly 496 | variant |
Arg 498 | Gln 498 | conflict |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Lys 527 | - | expression tag |
Lys 528 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 117892.7 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 488.6 | |
All* | Total formula weight | 118381.3 |