7ZCY
Sporosarcina pasteurii urease (SPU) co-crystallized in the presence of an Ebselen-derivative and bound to Se atoms
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Urease subunit gamma | polymer | 100 | 11134.9 | 1 | UniProt (P41022) Pfam (PF00547) | Sporosarcina pasteurii | Urea amidohydrolase subunit gamma |
| 2 | B (B) | Urease subunit beta | polymer | 122 | 13529.1 | 1 | UniProt (P41021) Pfam (PF00699) | Sporosarcina pasteurii | Urea amidohydrolase subunit beta |
| 3 | C (C) | Urease subunit alpha | polymer | 570 | 61575.6 | 1 | UniProt (P41020) Pfam (PF00449) Pfam (PF01979) | Sporosarcina pasteurii | Urea amidohydrolase subunit alpha |
| 4 | AA, BA, CA, D, DA... (C, A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 20 | Chemie (EDO) | |||
| 5 | G, J, K, L, R... (A, B, C) | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
| 6 | M, N (C) | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) | |||
| 7 | O (C) | HYDROXIDE ION | non-polymer | 17.0 | 1 | Chemie (OH) | |||
| 8 | Q (C) | N-(2-chloranyl-4-fluoranyl-phenyl)-2-selanyl-benzamide | non-polymer | 328.6 | 1 | Chemie (IU9) | |||
| 9 | JA, KA (C) | SELENIUM ATOM | non-polymer | 79.0 | 2 | Chemie (SE) | |||
| 10 | LA, MA, NA (A, B, C) | water | water | 18.0 | 767 | Chemie (HOH) |
Sequence modifications
A: 1 - 100 (UniProt: P41022)
C: 1 - 570 (UniProt: P41020)
| PDB | External Database | Details |
|---|---|---|
| Ala 20 | Leu 20 | variant |
| Lys 22 | Arg 22 | variant |
| PDB | External Database | Details |
|---|---|---|
| Tyr 35 | - | insertion |
| - | Val 42 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 86239.6 | |
| Non-Polymers* | Number of molecules | 34 |
| Total formula weight | 2630.8 | |
| All* | Total formula weight | 88870.4 |
