7YRN
Cyro-EM structure of HCMV glycoprotein B in complex with 1B03 Fab
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Envelope glycoprotein B | polymer | 731 | 83545.5 | 3 | UniProt (B9VXM4) Pfam (PF12154) Pfam (PF17416) Pfam (PF17417) Pfam (PF00606) In PDB | Human betaherpesvirus 5 | gB |
| 2 | D, F, H | 1B03 Fab antibody Heavy Chain | polymer | 223 | 23851.8 | 3 | Homo sapiens | ||
| 3 | E, G, I | 1B03 Fab antibody Light Chain | polymer | 214 | 23508.1 | 3 | Homo sapiens | ||
| 4 | J, K, L | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 5 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 699 (UniProt: B9VXM4)
| PDB | External Database | Details |
|---|---|---|
| His 156 | Ile 156 | conflict |
| Arg 157 | His 157 | conflict |
| Asn 240 | Trp 240 | conflict |
| Thr 242 | Tyr 242 | conflict |
| Ser 246 | Cys 246 | conflict |
| Glu 457 | Arg 457 | conflict |
| Glu 460 | Arg 460 | conflict |
| Lys 700 | - | expression tag |
| Gly 701 | - | expression tag |
| Leu 702 | - | expression tag |
| Asn 703 | - | expression tag |
| Asp 704 | - | expression tag |
| Ile 705 | - | expression tag |
| Phe 706 | - | expression tag |
| Glu 707 | - | expression tag |
| Ala 708 | - | expression tag |
| Gln 709 | - | expression tag |
| Lys 710 | - | expression tag |
| Ile 711 | - | expression tag |
| Glu 712 | - | expression tag |
| Trp 713 | - | expression tag |
| His 714 | - | expression tag |
| Glu 715 | - | expression tag |
| Leu 716 | - | expression tag |
| Glu 717 | - | expression tag |
| Val 718 | - | expression tag |
| Leu 719 | - | expression tag |
| Phe 720 | - | expression tag |
| Gln 721 | - | expression tag |
| Gly 722 | - | expression tag |
| Pro 723 | - | expression tag |
| Gly 724 | - | expression tag |
| His 725 | - | expression tag |
| His 726 | - | expression tag |
| His 727 | - | expression tag |
| His 728 | - | expression tag |
| His 729 | - | expression tag |
| His 730 | - | expression tag |
| His 731 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 392716.3 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1273.2 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1327.2 | |
| All* | Total formula weight | 395316.8 |
