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7Y7A

In situ double-PBS-PSII-PSI-LHCs megacomplex from Porphyridium purpureum.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, AD, AMB, BGB, IXA...
(A1, A2, A4, Y5, A8...)
R-phycoerythrin gamma chain, chloroplasticpolymer29031793.020UniProt (A0A5J4YX19)Porphyridium purpureum
2AFA, AKA, AZ, B, BD...
(B1, B4, B8, BI, BK...)
Phycobilisome rod-core linker polypeptidepolymer23226996.712UniProt (W0RZ90)
Pfam (PF00427)
UniProt (by SIFTS) (A0A343KP28)
Porphyridium purpureum
3ABB, AJB, BFA, BKA, BZ...
(C1, E1, G1, I1, K1...)
C-phycocyanin alpha subunitpolymer16217478.772UniProt (W0RYI4)
Pfam (PF00502)
UniProt (by SIFTS) (P37207)
Porphyridium purpureum
4BBB, BJB, CFA, CKA, CZ...
(D1, F1, H1, J1, L1...)
C-phycocyanin beta subunitpolymer17218242.772UniProt (W0RZB2)
Pfam (PF00502)
UniProt (by SIFTS) (P37208)
Porphyridium purpureum
5AAA, AB, ABA, AGA, AHA...
(O1, Q1, S1, U1, W1...)
Phycoerythrin alpha subunitpolymer16417824.0532UniProt (E2IH77)
Pfam (PF00502)
UniProt (by SIFTS) (P11392)
Porphyridium purpureumR-phycoerythrin alpha subunit
6AA, AC, ACA, ACB, AE...
(P1, R1, T1, V1, Y1...)
B-phycoerythrin beta chainpolymer17718584.2576UniProt (P11393)
Pfam (PF00502)
Porphyridium purpureum
7IJ, JJA, JX, LBB, LJB...
(X1, X4, X8, XI, XK...)
Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rodpolymer36339727.612UniProt (A0A5J4YM59)
Pfam (PF00427)
Pfam (PF01383)
Porphyridium purpureum
8HYA, LCA, MB, XU
(d2, dF, dM, dc)
Phycobilisome 27.9 kDa linker polypeptide, phycoerythrin-associated, rodpolymer34237176.04UniProt (A0A5J4Z162)
Pfam (PF00427)
Porphyridium purpureum
9EXA, FXA, IIA, INA, JH...
(A3, w6, x6, AC, wQ...)
R-phycoerythrin gamma chain, chloroplasticpolymer27329453.612UniProt (A0A5J4YZM7)Porphyridium purpureum
10GXA, KIA, KNA, LH, MOB...
(B3, y6, BC, yQ, yT...)
R-phycoerythrin gamma chain, chloroplasticpolymer29031358.88UniProt (A0A5J4YZH3)Porphyridium purpureum
11MPB, MQ, NPA, OC
(b3, bC, bV, bp)
Phycobilisome 32.1 kDa linker polypeptide, phycocyanin-associated, rodpolymer49053601.34UniProt (A0A5J4YX63)
Pfam (PF00427)
Porphyridium purpureum
12AEB, AGB, MF, XR
(e5, eD, eg, ei)
Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rodpolymer24827499.04UniProt (A0A5J4Z7F4)
Pfam (PF00427)
Porphyridium purpureum
13HXA, LIA, LNA, MH
(z6, zQ, zT, zb)
Phycobilisome 31.8 kDa linker polypeptide, phycoerythrin-associated, rodpolymer49855146.74UniProt (A0A5J4YI31)
Pfam (PF00427)
Porphyridium purpureum
14NH, NNB
(17, 1o)
Chlorophyll a-b binding protein, chloroplasticpolymer17419187.72UniProt (A0A5J4Z6J3)
Pfam (PF00504)
Porphyridium purpureum
15OH, ONB
(27, 2o)
Chlorophyll a-b binding protein of LHCII type III, chloroplasticpolymer16618031.92UniProt (P93450)
Pfam (PF00504)
Porphyridium purpureumLight-harvesting complex I polypeptide
16PH, PNB
(37, 3o)
Chlorophyll a-b binding protein, chloroplasticpolymer16918526.52UniProt (A0A5J4YYC4)
Pfam (PF00504)
Porphyridium purpureum
17QH, QNB
(47, 4o)
Chlorophyll a-b binding protein 1B-21, chloroplasticpolymer17219333.62UniProt (A0A5J4ZAY0)
Pfam (PF00504)
Porphyridium purpureum
18RH, RNB
(57, 5o)
Chlorophyll a-b binding protein 1B-21, chloroplasticpolymer17419059.32UniProt (A0A5J4YSS5)
Pfam (PF00504)
Porphyridium purpureum
19SH, SNB
(67, 6o)
Chlorophyll a-b binding protein 1B-21, chloroplasticpolymer16918666.62UniProt (A0A5J4YN76)
Pfam (PF00504)
Porphyridium purpureum
20TH, TNB
(77, 7o)
Fucoxanthin-chlorophyll a-c binding protein, chloroplasticpolymer16418397.22UniProt (A0A5J4YKR2)
Pfam (PF00504)
Porphyridium purpureum
21UH, UNB
(87, 8o)
RedCAPpolymer18019576.82UniProt (A0A5J4YP51)
Pfam (PF00504)
Porphyridium purpureum
22VH, VNB
(A7, Ao)
Photosystem I P700 chlorophyll a apoprotein A1polymer74582545.82UniProt (W0S1N1)
Pfam (PF00223)
Porphyridium purpureumPsaA
23WH, WNB
(B7, Bo)
PsaBpolymer73282055.62UniProt (W0RYU6)
Pfam (PF00223)
Porphyridium purpureum
24XH, XNB
(C7, Co)
Photosystem I iron-sulfur centerpolymer808676.12UniProt (W0S231)
Pfam (PF12838)
Porphyridium purpureum9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC
25YH, YNB
(D7, Do)
Photosystem I reaction center subunit IIpolymer13014458.42UniProt (W0RZ23)
Pfam (PF02531)
Porphyridium purpureum
26ZH, ZNB
(E7, Eo)
Photosystem I reaction center subunit IVpolymer586693.52UniProt (W0RYG1)
Pfam (PF02427)
Porphyridium purpureum
27AI, AOB
(F7, Fo)
Photosystem I reaction center subunit IIIpolymer15817646.52UniProt (W0RZ71)
Pfam (PF02507)
Porphyridium purpureumPSI-F
28BI, BOB
(G7, Go)
Cytochrome c6polymer848885.92UniProt (W0S1L8)
Pfam (PF13442)
UniProt (by SIFTS) (A0A343KNS7)
Porphyridium purpureumCytochrome c-553,Cytochrome c553,Soluble cytochrome f
29CI, COB
(I7, Io)
Photosystem I reaction center subunit VIIIpolymer313388.22UniProt (W0RZ51)
Pfam (PF00796)
Porphyridium purpureum
30DI, DOB
(J7, Jo)
Photosystem I reaction center subunit IXpolymer384362.22UniProt (W0RYG9)
Pfam (PF01701)
Porphyridium purpureum
31EI, EOB
(K7, Ko)
Photosystem I reaction center subunit PsaKpolymer706992.32UniProt (W0RZ04)
Pfam (PF01241)
Porphyridium purpureumPhotosystem I subunit X
32FI, FOB
(L7, Lo)
Photosystem I reaction center subunit XIpolymer14014928.02UniProt (W0S1Z0)
Pfam (PF02605)
Porphyridium purpureumPSI subunit V,PSI-L
33GI, GOB
(M7, Mo)
Photosystem I reaction center subunit XIIpolymer303187.92UniProt (W0S1Z9)
Pfam (PF07465)
Porphyridium purpureumPSI-M
34HI, HOB
(N7, No)
Ferredoxinpolymer9910590.62UniProt (W0RYF9)
Pfam (PF00111)
Porphyridium purpureum
35II, IOB
(O7, Oo)
Photosystem I subunit Opolymer929934.42UniProt (A0A5J4YUC8)
Pfam (PF22832)
Porphyridium purpureum
36JI, JOB
(R7, Ro)
PsaRpolymer12112456.62UniProt (A0A5J4YR43)Porphyridium purpureum
37KI, KOB
(Z7, Zo)
LPS1polymer665634.92Porphyridium purpureum
38ADA, ALB, BKB, ITA, JSA...
(A9, a9, AE, aE, AO...)
Photosystem II protein D1polymer36039519.010UniProt (W0RZ08)
Pfam (PF00124)
Porphyridium purpureumPSII D1 protein,Photosystem II Q(B) protein
39AEA, BDA, BLB, CKB, JTA...
(B9, b9, BE, bE, BO...)
Photosystem II CP47 reaction center proteinpolymer50956412.210UniProt (W0RZ84)
Pfam (PF00421)
Porphyridium purpureumPSII 47 kDa protein,Protein CP-47
40AK, AS, BEA, CDA, CLB...
(C9, c9, CE, cE, CO...)
Photosystem II CP43 reaction center proteinpolymer47352081.410UniProt (W0RYK4)
Pfam (PF00421)
Porphyridium purpureumPSII 43 kDa protein,Protein CP-43
41AL, AT, BK, BS, CEA...
(D9, d9, DE, dE, DO...)
Photosystem II D2 proteinpolymer35139253.910UniProt (W0RYZ0)
Pfam (PF00124)
Porphyridium purpureumPSII D2 protein,Photosystem Q(A) protein
42BL, BT, CK, CS, DEA...
(E9, e9, EE, eE, EO...)
Cytochrome b559 subunit alphapolymer849477.610UniProt (W0RYH5)
Pfam (PF00283)
Pfam (PF00284)
Porphyridium purpureumPSII reaction center subunit V
43CL, CT, DK, DS, EEA...
(F9, f9, FE, fE, FO...)
Cytochrome b559 subunit betapolymer445032.910UniProt (W0S1X0)
Pfam (PF00283)
Porphyridium purpureumPSII reaction center subunit VI
44DL, DT, EK, ES, FEA...
(G9, g9, GE, gE, GO...)
PSII_Pbs31 domain-containing proteinpolymer21322527.810UniProt (A0A5J4Z270)
Pfam (PF18240)
Porphyridium purpureum
45EL, ET, FK, FS, GEA...
(H9, h9, HE, hE, HO...)
Photosystem II reaction center protein Hpolymer677576.910UniProt (W0RYU5)
Pfam (PF00737)
Porphyridium purpureumPSII-H
46FL, FT, GK, GS, HEA...
(I9, i9, IE, iE, IO...)
Photosystem II reaction center protein Ipolymer384522.310UniProt (W0RYJ5)
Pfam (PF02532)
Porphyridium purpureumPSII-I,PSII 4.4 kDa protein
47GL, GT, HK, HS, IEA...
(J9, j9, JE, jE, JO...)
Photosystem II reaction center protein Jpolymer393944.710UniProt (W0RYQ6)
Pfam (PF01788)
Porphyridium purpureumPSII-J
48HL, HT, IK, IS, JEA...
(K9, k9, KE, kE, KO...)
Photosystem II reaction center protein Kpolymer455178.210UniProt (W0RZ28)
Pfam (PF02533)
Porphyridium purpureumPSII-K
49IL, IT, JK, JS, KEA...
(L9, l9, LE, lE, LO...)
Photosystem II reaction center protein Lpolymer384420.110UniProt (W0RZ31)
Pfam (PF02419)
Porphyridium purpureumPSII-L
50JL, JT, KK, KS, LEA...
(M9, m9, ME, mE, MO...)
PsbMpolymer10110463.010UniProt (A0A5J4YYD7)
Pfam (PF05151)
Porphyridium purpureum
51KL, KT, LK, LS, MEA...
(N9, n9, NE, nE, NO...)
Psb34polymer292486.110Porphyridium purpureum
52LL, LT, MK, MS, NEA...
(O9, o9, OE, oE, OO...)
Oxygen-evolving enhancer proteinpolymer28730890.110UniProt (E5RPB3)
Pfam (PF01716)
UniProt (by SIFTS) (A0A5J4Z3A3)
Porphyridium purpureum
53ML, MT, NK, NS, OEA...
(Q9, q9, QE, qE, QO...)
PsbQ'polymer20522397.510UniProt (A0A5J4Z679)
Pfam (PF05757)
Porphyridium purpureum
54NL, NT, OK, OS, PEA...
(R9, r9, RE, rE, RO...)
Photosystem II protein Ypolymer333727.510UniProt (W0S1X5)
Pfam (PF06298)
Porphyridium purpureum
55ATA, OT, PK, PS, RDA...
(S9, SE, sE, SO, SZ...)
LPP1polymer11910145.56Porphyridium purpureum
56BTA, OL, PT, QEA, QK...
(T9, t9, TE, tE, TO...)
Photosystem II reaction center protein Tpolymer313579.410UniProt (W0RYV0)
Pfam (PF01405)
Porphyridium purpureumPSII-T
57AUA, CTA, PL, QT, REA...
(U9, u9, UE, uE, UO...)
PS II complex 12 kDa extrinsic proteinpolymer15016382.710UniProt (A0A5J4YLQ6)
Pfam (PF06514)
Porphyridium purpureum
58BUA, DTA, QL, RT, SEA...
(V9, v9, VE, vE, VO...)
Cytochrome c550polymer16217764.410UniProt (W0RYZ6)
Pfam (PF14495)
Porphyridium purpureumOxygen-evolving complex component
59CUA, ETA, RL, ST, TEA...
(W9, w9, WE, wE, WO...)
PsbWpolymer463932.810Porphyridium purpureum
60DUA, FTA, SL, TT, UEA...
(X9, x9, XE, xE, XO...)
Photosystem II reaction center X proteinpolymer394148.010UniProt (W0RZ76)
Pfam (PF06596)
Porphyridium purpureum
61EUA, GTA, TL, UT, VEA...
(Y9, y9, YE, yE, YO...)
Photosystem II reaction center protein Ycf12polymer343681.610UniProt (W0RZ91)
Pfam (PF05969)
Porphyridium purpureum
62FUA, HTA, UL, VT, WEA...
(Z9, z9, ZE, zE, ZO...)
Photosystem II reaction center protein Zpolymer626500.710UniProt (W0RZ40)
Pfam (PF01737)
Porphyridium purpureumPSII-Z
63GUA, HUA, VL, WL, WT...
(p9, P9, pE, PE, pO...)
CNTpolymer11810060.410Porphyridium purpureum
64BM, DQA, XL, ZPA
(AA, EA, AW, EW)
Linker4polymer10311352.94UniProt (A0A5J4YXP2)Porphyridium purpureum
65HM, JQA, RM, TQA
(KA, UA, KW, UW)
CaRSP1polymer22624689.34UniProt (A0A5J4YJY8)Porphyridium purpureum
66BRA, TM, VQA, ZM
(WA, cA, WW, cW)
CaRSP2polymer13915500.44UniProt (A0A5J4YX67)Porphyridium purpureum
67CN, EN, ERA, GRA
(fA, hA, fW, hW)
FAS1 domain-containing proteinpolymer28831333.04UniProt (A0A5J4Z027)
Pfam (PF02469)
Porphyridium purpureum
68FN, IO, IYA, LZA
(2B, ZB, 2d, Zd)
Lrc4polymer15916915.34UniProt (A0A5J4YTV6)Porphyridium purpureum
69GN, JO, JYA, MZA
(3B, aB, 3d, ad)
LRC5polymer28830273.04UniProt (A0A5J4Z2M2)Porphyridium purpureum
70HN, KO, KYA, NZA
(4B, bB, 4d, bd)
FAS1 domain-containing proteinpolymer25326620.74UniProt (A0A5J4ZA95)
Pfam (PF02469)
Porphyridium purpureum
71IN, JN, LYA, MYA
(6B, 7B, 6d, 7d)
Phycobiliprotein ApcEpolymer87999484.44UniProt (A0A343KPB8)
Pfam (PF00502)
Pfam (PF00427)
Porphyridium purpureumAnchor polypeptide,PBS-anchor protein,Phycobilisome linker polypeptide
72AP, AZA, BAB, BO, CP...
(AB, CB, EB, GB, JB...)
Allophycocyanin alpha subunitpolymer16117639.140UniProt (W0RYM0)
Pfam (PF00502)
Porphyridium purpureum
73AAB, AO, BP, BZA, CAB...
(BB, DB, FB, HB, IB...)
Allophycocyanin beta subunitpolymer16117415.844UniProt (W0S279)
Pfam (PF00502)
Porphyridium purpureum
74FO, GP, IZA, JAB
(VB, xB, Vd, xd)
Allophycocyanin gamma subunitpolymer16118126.94UniProt (W0S1U6)
Pfam (PF00502)
Porphyridium purpureum
75GO, HP, JZA, KAB
(WB, yB, Wd, yd)
Allophycocyanin beta 18 subunitpolymer17319778.74UniProt (W0RZE2)
Pfam (PF00502)
Porphyridium purpureum
76HO, IP, KZA, LAB
(XB, zB, Xd, zd)
Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, corepolymer9310429.04UniProt (A0A5J4YVZ2)
Pfam (PF01383)
Porphyridium purpureum
77JP, KP, MAB, NAB
(YB, 5B, 5d, Yd)
LPP2polymer16217273.84UniProt (A0A5J4Z365)Porphyridium purpureum
78AV, IRA, JRA, MCA, NCA...
(AG, aG, AN, aN, AX...)
LRHpolymer23720187.88Porphyridium purpureum
79ADB, AFB, HVA, LW, NCB...
(MH, ZH, Ma, Za, Mf...)
R-phycoerythrin gamma chain, chloroplasticpolymer33336925.08UniProt (A0A5J4YNU6)Porphyridium purpureum
80MIB, NIB, XY, YY
(MJ, ZJ, Zk, Mk)
Phycobilisome 27.9 kDa linker polypeptide, phycoerythrin-associated, rodpolymer31634958.74UniProt (A0A5J4Z323)
Pfam (PF00427)
Porphyridium purpureum
81KBA, KOA, LBA, LOA
(YL, bL, YU, bU)
LR6polymer42646295.34UniProt (A0A5J4YMI8)
Pfam (PF00427)
Porphyridium purpureum
82AAE, AAF, AAH, ABC, ABE...
(DI, VQ, Sg, Y4, SI...)
PHYCOERYTHROBILINnon-polymer588.72988Chemie (PEB)
83ACH, ADF, AHD, AKC, AND...
(Mh, yQ, AC, y6, YD...)
PHYCOUROBILINnon-polymer590.796Chemie (PUB)
84AAC, AGD, AHF, AMH, ARG...
(K4, UB, LS, Fl, Id...)
PHYCOCYANOBILINnon-polymer588.7240Chemie (CYC)
85AAD, AAG, AAI, ABD, ABI...
(b9, AZ, 4o, c9, 6o...)
CHLOROPHYLL Anon-polymer893.5724Chemie (CLA)
86LLC, RZH
(37, 3o)
beta-D-glucopyranosenon-polymer180.22Chemie (BGC)
87MNC, NNC, SBI, TBI
(87, 8o)
(1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-olnon-polymer568.94Chemie (ZEX)
88BPC, DFI, HDI, XQC
(A7, Bo, Ao, B7)
PHYLLOQUINONEnon-polymer450.74Chemie (PQN)
89AGG, APH, AWC, BPH, BWC...
(lZ, Am, A9, M9, m9...)
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.079Chemie (LHG)
90ADG, AGI, AQD, ARC, ASC...
(ZZ, Jo, HE, B7, K7...)
BETA-CAROTENEnon-polymer536.9142Chemie (BCR)
91HRC, IRC, NFI, OFI, PPC...
(C7, Co, B7, Bo)
IRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
92ACD, BBG, BDG, BQD, BRH...
(l9, BZ, aZ, JE, Cm...)
DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.392Chemie (DGD)
93BVH, CZC, EGG, FCD, GQD...
(vm, V9, vZ, v9, VE...)
PROTOPORPHYRIN IX CONTAINING FEnon-polymer616.522Chemie (HEM)
94BGI, VRC
(Jo, J7)
(2S)-2,3-dihydroxypropyl octadecanoatenon-polymer358.62Chemie (3XQ)
95JSC, OGI
(N7, No)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.82Chemie (FES)
96CSH, DBG, EDG, FND, GZC...
(am, CZ, aZ, AE, a9...)
CHLORIDE IONnon-polymer35.510Chemie (CL)
97BAG, CPH, CWC, GSH, JDG...
(AZ, Am, A9, am, aZ...)
CA-MN4-O5 CLUSTERnon-polymer339.810Chemie (OEX)
98CAG, DPH, DWC, HSH, KDG...
(AZ, Am, A9, am, aZ...)
FE (III) IONnon-polymer55.810Chemie (FE)
99ASE, AUE, CCG, DAG, EPH...
(aO, dO, DZ, AZ, Am...)
PHEOPHYTIN Anon-polymer871.220Chemie (PHO)
100ABG, ARH, ASH, ATE, AVH...
(BZ, Cm, Xm, bO, qm...)
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.2100Chemie (LMG)
101FAG, GPH, GWC, HFG, KSH...
(AZ, Am, A9, dZ, am...)
BICARBONATE IONnon-polymer61.010Chemie (BCT)
102CSE, EUE, GAG, GCG, HPH...
(aO, dO, AZ, DZ, Am...)
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEnon-polymer749.220Chemie (PL9)
103CVH, DRE, DZC, GCD, HQD...
(wm, IO, W9, w9, WE...)
GLYCEROLnon-polymer92.110Chemie (GOL)
104PKI, QKI, RKI, SKI, TKI
(a9, aE, aO, aZ, am)
waterwater18.010Chemie (HOH)
Sequence modifications
X1, X4, X8, XI, XK, XP, XR, XS, Xe, Xj, Xl, Xn: 9 - 371 (UniProt: A0A5J4YM59)
PDBExternal DatabaseDetails
Ala 275Ser 267conflict
77, 7o: 38 - 201 (UniProt: A0A5J4YKR2)
PDBExternal DatabaseDetails
-Lys 113deletion
-Thr 114deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1792
Total formula weight33841172.7
Non-Polymers*Number of molecules4593
Total formula weight2962730.6
All*Total formula weight36803903.3
*Water molecules are not included.

226707

PDB entries from 2024-10-30

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