7X2M
Crystal structure of nanobody 1-2C7 with SARS-CoV-2 RBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (E) | Spike protein S1 | polymer | 203 | 22994.8 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
| 2 | B (B) | 1-2C7 | polymer | 124 | 13458.7 | 1 | Vicugna pacos | ||
| 3 | C (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G94817IN) | |||
| 4 | D, E (E, B) | water | water | 18.0 | 225 | Chemie (HOH) |
Sequence modifications
E: 333 - 529 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Asn 417 | Lys 417 | variant |
| Lys 484 | Glu 484 | variant |
| Tyr 501 | Asn 501 | variant |
| His 530 | - | expression tag |
| His 531 | - | expression tag |
| His 532 | - | expression tag |
| His 533 | - | expression tag |
| His 534 | - | expression tag |
| His 535 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 36453.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 586.5 | |
| All* | Total formula weight | 37040.0 |
