7WU5
Cryo-EM structure of the adhesion GPCR ADGRF1(H565A/T567A) in complex with miniGi
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Guanine nucleotide-binding protein G(i) subunit alpha-1 | polymer | 241 | 27563.4 | 1 | UniProt (A0A3B3IUA8) UniProt (P63096) Pfam (PF00503) | Homo sapiens (human) | Adenylate cyclase-inhibiting G alpha protein |
| 2 | B (B) | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | polymer | 351 | 38744.4 | 1 | UniProt (P62873) Pfam (PF25391) | Homo sapiens (human) | Transducin beta chain 1 |
| 3 | C (C) | Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | polymer | 71 | 7861.1 | 1 | UniProt (P59768) Pfam (PF00631) | Homo sapiens (human) | G gamma-I |
| 4 | D (R) | Adhesion G-protein coupled receptor F1 | polymer | 674 | 74513.4 | 1 | UniProt (Q5T601) Pfam (PF01825) Pfam (PF00002) | Homo sapiens (human) | G protein-coupled receptor 110,G protein-coupled receptor KPG_012,G protein-coupled receptor PGR19 |
| 5 | E (R) | CHOLESTEROL | non-polymer | 386.7 | 1 | Chemie (CLR) PubChem (16219173) PubChem (16758052) PubChem (40477506) PubChem (40557614) PubChem (42579431) PubChem (42579432) PubChem (45044259) PubChem (49853509) PubChem (50990013) PubChem (52934537) PubChem (56621683) PubChem (57915018) PubChem (57939063) PubChem (58428240) PubChem (58445498) PubChem (58663286) PubChem (59450329) PubChem (59628412) PubChem (59965215) PubChem (71234641) PubChem (59993755) PubChem (60001463) PubChem (66634651) PubChem (68055877) PubChem (68166463) PubChem (68315613) PubChem (70795838) PubChem (70797612) PubChem (70954610) PubChem (70957185) PubChem (71463909) PubChem (89951918) PubChem (90224410) PubChem (91298236) PubChem (101624109) PubChem (124225449) PubChem (124429284) PubChem (124909223) PubChem (124909224) PubChem (124909225) PubChem (130459183) PubChem (131992107) PubChem (139568882) PubChem (142983773) PubChem (144054483) PubChem (144209461) PubChem (144331236) PubChem (144808354) PubChem (145053568) PubChem (145157652) PubChem (145215073) PubChem (145230478) PubChem (146320991) PubChem (147857230) PubChem (154993519) PubChem (158603858) PubChem (162906452) PubChem (162906453) PubChem (162906454) PubChem (162906455) PubChem (162906456) PubChem (162906457) PubChem (163255768) PubChem (163389210) PubChem (164665303) PubChem (166553771) PubChem (166712004) PubChem (170116175) PubChem (171764280) PubChem (171817101) PubChem (171817104) PubChem (174285573) PubChem (176980071) PubChem (18640088) PubChem (1715243) PubChem (1715244) PubChem (23423981) PubChem (44654663) PubChem (46937002) PubChem (59274407) PubChem (68311425) PubChem (68311398) PubChem (143173313) PubChem (177156123) PubChem (5997) PubChem (1551269) PubChem (90070115) PubChem (117965027) PubChem (6432564) PubChem (6710666) PubChem (124146240) PubChem (7059399) PubChem (124897607) PubChem (124896959) PubChem (10861996) PubChem (132837164) PubChem (11834483) PubChem (11888915) PubChem (11888914) PubChem (304) PubChem (138967089) PubChem (139566851) PubChem (15939944) PubChem (171828367) PubChem (173516975) PubChem (191463) PubChem (368063) PubChem (369319) PubChem (638019) PubChem (1549081) PubChem (1553803) PubChem (5283629) PubChem (5284644) PubChem (5315842) PubChem (6419195) PubChem (6994560) PubChem (7055705) PubChem (7055706) PubChem (7059398) PubChem (7059400) PubChem (7059635) PubChem (7103033) PubChem (7182477) PubChem (7182478) PubChem (9909206) PubChem (10045721) PubChem (71168115) PubChem (10134774) PubChem (10293553) PubChem (71173031) PubChem (11003580) PubChem (11025495) PubChem (11058155) PubChem (11463329) PubChem (11868624) PubChem (11868625) PubChem (11869366) PubChem (11869367) PubChem (11869368) PubChem (11869369) PubChem (12120344) PubChem (12156156) PubChem (12303135) PubChem (12303148) PubChem (12303156) PubChem (12303159) PubChem (12303160) | |||
| 6 | F (R) | [(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] hexadecanoate | non-polymer | 496.6 | 1 | Chemie (K6G) |
Sequence modifications
A: 4 - 172 (UniProt: A0A3B3IUA8)
A: 181 - 354 (UniProt: P63096)
B: 2 - 340 (UniProt: P62873)
R: 251 - 860 (UniProt: Q5T601)
| PDB | External Database | Details |
|---|---|---|
| Met -11 | - | initiating methionine |
| Gly -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| Glu -3 | - | expression tag |
| Asn -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Tyr 0 | - | expression tag |
| Phe 1 | - | expression tag |
| Gln 2 | - | expression tag |
| Gly 3 | - | expression tag |
| Asp 42 | Gly 42 | conflict |
| Asn 43 | Glu 43 | conflict |
| Gly 173 | - | linker |
| Gly 174 | - | linker |
| Gly 175 | - | linker |
| Gly 176 | - | linker |
| Gly 177 | - | linker |
| Gly 178 | - | linker |
| Gly 179 | - | linker |
| Gly 180 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Asp 217 | Gly 217 | conflict |
| Ala 219 | Thr 219 | conflict |
| Asp 226 | Ala 226 | conflict |
| - | Asp 231 | deletion |
| - | Leu 232 | deletion |
| - | Val 233 | deletion |
| - | Leu 234 | deletion |
| - | Ala 235 | deletion |
| - | Glu 236 | deletion |
| - | Asp 237 | deletion |
| - | Glu 238 | deletion |
| - | Glu 239 | deletion |
| - | Met 240 | deletion |
| Gln 288 | Pro 288 | conflict |
| Ala 332 | Val 332 | conflict |
| Ile 335 | Val 335 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met -10 | - | expression tag |
| His -9 | - | expression tag |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| Leu -1 | - | expression tag |
| Leu 0 | - | expression tag |
| Gln 1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 225 | - | initiating methionine |
| Lys 226 | - | expression tag |
| Thr 227 | - | expression tag |
| Ile 228 | - | expression tag |
| Ile 229 | - | expression tag |
| Ala 230 | - | expression tag |
| Leu 231 | - | expression tag |
| Ser 232 | - | expression tag |
| Tyr 233 | - | expression tag |
| Ile 234 | - | expression tag |
| Phe 235 | - | expression tag |
| Cys 236 | - | expression tag |
| Leu 237 | - | expression tag |
| Val 238 | - | expression tag |
| Phe 239 | - | expression tag |
| Ala 240 | - | expression tag |
| Asp 241 | - | expression tag |
| Tyr 242 | - | expression tag |
| Lys 243 | - | expression tag |
| Asp 244 | - | expression tag |
| Asp 245 | - | expression tag |
| Asp 246 | - | expression tag |
| Asp 247 | - | expression tag |
| Gly 248 | - | expression tag |
| Ala 249 | - | expression tag |
| Pro 250 | - | expression tag |
| Ala 565 | His 565 | engineered mutation |
| Ala 567 | Thr 567 | engineered mutation |
| Glu 861 | - | expression tag |
| Phe 862 | - | expression tag |
| Leu 863 | - | expression tag |
| Glu 864 | - | expression tag |
| Val 865 | - | expression tag |
| Leu 866 | - | expression tag |
| Phe 867 | - | expression tag |
| Gln 868 | - | expression tag |
| Gly 869 | - | expression tag |
| Pro 870 | - | expression tag |
| Trp 871 | - | expression tag |
| Ser 872 | - | expression tag |
| His 873 | - | expression tag |
| Pro 874 | - | expression tag |
| Gln 875 | - | expression tag |
| Phe 876 | - | expression tag |
| Glu 877 | - | expression tag |
| Lys 878 | - | expression tag |
| Gly 879 | - | expression tag |
| Gly 880 | - | expression tag |
| Gly 881 | - | expression tag |
| Ser 882 | - | expression tag |
| Gly 883 | - | expression tag |
| Gly 884 | - | expression tag |
| Gly 885 | - | expression tag |
| Ser 886 | - | expression tag |
| Gly 887 | - | expression tag |
| Gly 888 | - | expression tag |
| Ser 889 | - | expression tag |
| Ala 890 | - | expression tag |
| Trp 891 | - | expression tag |
| Ser 892 | - | expression tag |
| His 893 | - | expression tag |
| Pro 894 | - | expression tag |
| Gln 895 | - | expression tag |
| Phe 896 | - | expression tag |
| Glu 897 | - | expression tag |
| Lys 898 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 148682.3 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 883.3 | |
| All* | Total formula weight | 149565.6 |






