7WTF
SARS-CoV-2 Omicron variant spike in complex with Fab XGv051
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H, G, I | Heavy chain of XGv051 | polymer | 120 | 13067.4 | 3 | Homo sapiens | ||
2 | L, J, K | Light chain of XGv051 | polymer | 104 | 11241.5 | 3 | Homo sapiens | ||
3 | B, C, D | Spike glycoprotein | polymer | 1149 | 127791.1 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
4 | b, c, A, E, N... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
5 | a, F, M, R, S | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 5 | In PDB GlyTouCan (G15407YE) | |||
6 | D, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 30 | Chemie (NAG) |
Sequence modifications
B, C, D: 14 - 1164 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Val 67 | Ala 67 | variant |
- | His 69 | deletion |
- | Val 70 | deletion |
Ile 95 | Thr 95 | variant |
Asp 142 | Gly 142 | variant |
- | Val 143 | deletion |
- | Tyr 144 | deletion |
- | Tyr 145 | deletion |
- | Asn 211 | deletion |
Ile 211 | Leu 212 | variant |
Glu 214 | - | insertion |
Pro 215 | - | insertion |
Glu 216 | - | insertion |
Asp 341 | Gly 339 | variant |
Leu 373 | Ser 371 | variant |
Pro 375 | Ser 373 | variant |
Phe 377 | Ser 375 | variant |
Asn 419 | Lys 417 | variant |
Lys 442 | Asn 440 | variant |
Ser 448 | Gly 446 | variant |
Asn 479 | Ser 477 | variant |
Lys 480 | Thr 478 | variant |
Ala 486 | Glu 484 | variant |
Arg 495 | Gln 493 | variant |
Ser 498 | Gly 496 | variant |
Arg 500 | Gln 498 | variant |
Tyr 503 | Asn 501 | variant |
His 507 | Tyr 505 | variant |
Lys 549 | Thr 547 | variant |
Gly 616 | Asp 614 | variant |
Tyr 657 | His 655 | variant |
Ala 685 | Arg 683 | variant |
Ala 687 | Arg 685 | variant |
Lys 766 | Asn 764 | variant |
Tyr 798 | Asp 796 | variant |
Pro 819 | Phe 817 | variant |
Lys 858 | Asn 856 | variant |
Pro 894 | Ala 892 | variant |
Pro 901 | Ala 899 | variant |
Pro 944 | Ala 942 | variant |
His 956 | Gln 954 | variant |
Lys 971 | Asn 969 | variant |
Phe 983 | Leu 981 | variant |
Pro 988 | Lys 986 | engineered mutation |
Pro 989 | Val 987 | engineered mutation |
Arg 1165 | - | expression tag |
Arg 1166 | - | expression tag |
Ala 1167 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 456300.1 | |
Branched | Number of molecules | 20 |
Total formula weight | 9298.7 | |
Non-Polymers* | Number of molecules | 30 |
Total formula weight | 6636.2 | |
All* | Total formula weight | 472235.1 |