7VG3
Cryo-EM structure of Arabidopsis DCL3 in complex with a 30-bp RNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Dicer-like 3 | polymer | 1621 | 182176.8 | 1 | UniProt (F4J0I5) Pfam (PF00270) Pfam (PF00271) Pfam (PF02170) Pfam (PF00636) UniProt (by SIFTS) (Q9LXW7) | Arabidopsis thaliana (Mouse-ear cress) | |
| 2 | B (C) | TAS1a RNA forward strand (5'-phosphorylated) | polymer | 30 | 9558.7 | 1 | Arabidopsis thaliana | ||
| 3 | C (D) | TAS1a RNA reverse strand | polymer | 32 | 10267.1 | 1 | Arabidopsis thaliana | ||
| 4 | D, E (A) | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
| 5 | F (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
A: 1 - 1570 (UniProt: F4J0I5)
| PDB | External Database | Details |
|---|---|---|
| Met -50 | - | initiating methionine |
| Trp -49 | - | expression tag |
| Ser -48 | - | expression tag |
| His -47 | - | expression tag |
| Pro -46 | - | expression tag |
| Gln -45 | - | expression tag |
| Phe -44 | - | expression tag |
| Glu -43 | - | expression tag |
| Lys -42 | - | expression tag |
| Gly -41 | - | expression tag |
| Gly -40 | - | expression tag |
| Gly -39 | - | expression tag |
| Ala -38 | - | expression tag |
| Arg -37 | - | expression tag |
| Gly -36 | - | expression tag |
| Gly -35 | - | expression tag |
| Ser -34 | - | expression tag |
| Gly -33 | - | expression tag |
| Gly -32 | - | expression tag |
| Gly -31 | - | expression tag |
| Ser -30 | - | expression tag |
| Trp -29 | - | expression tag |
| Ser -28 | - | expression tag |
| His -27 | - | expression tag |
| Pro -26 | - | expression tag |
| Gln -25 | - | expression tag |
| Phe -24 | - | expression tag |
| Glu -23 | - | expression tag |
| Lys -22 | - | expression tag |
| Gly -21 | - | expression tag |
| Phe -20 | - | expression tag |
| Asp -19 | - | expression tag |
| Tyr -18 | - | expression tag |
| Lys -17 | - | expression tag |
| Asp -16 | - | expression tag |
| Asp -15 | - | expression tag |
| Asp -14 | - | expression tag |
| Asp -13 | - | expression tag |
| Lys -12 | - | expression tag |
| Gly -11 | - | expression tag |
| Ser -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Asn -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Tyr -4 | - | expression tag |
| Phe -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 202002.6 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 145.6 | |
| All* | Total formula weight | 202148.2 |
