7USA

Structure of the human coronavirus CCoV-HuPn-2018 spike glycoprotein with domain 0 in the swung out conformation

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (A, B, C)	Spike glycoprotein	polymer	1469	161621.1	3	UniProt (A0A8E6CMP0)	unidentified human coronavirus	S glycoprotein,E2,Peplomer protein
2	AA, CA, D, E, F... (a, c, D, E, F...)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	21	In PDB GlyTouCan (G42666HT)
3	BA, DA, J, L, S... (b, d, J, L, S...)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	6	In PDB GlyTouCan (G15407YE)
4	AB, BB, CB, DB, EA... (C, A, B)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	30	Chemie (NAG)

Sequence modifications

A, B, C: 17 - 1392 (UniProt: A0A8E6CMP0)

PDB	External Database	Details
Met -15	-	initiating methionine
Gly -14	-	expression tag
Ile -13	-	expression tag
Leu -12	-	expression tag
Pro -11	-	expression tag
Ser -10	-	expression tag
Pro -9	-	expression tag
Gly -8	-	expression tag
Met -7	-	expression tag
Pro -6	-	expression tag
Ala -5	-	expression tag
Leu -4	-	expression tag
Leu -3	-	expression tag
Ser -2	-	expression tag
Leu -1	-	expression tag
Val 0	-	expression tag
Ser 1	-	expression tag
Leu 2	-	expression tag
Leu 3	-	expression tag
Ser 4	-	expression tag
Val 5	-	expression tag
Leu 6	-	expression tag
Leu 7	-	expression tag
Met 8	-	expression tag
Gly 9	-	expression tag
Cys 10	-	expression tag
Val 11	-	expression tag
Ala 12	-	expression tag
Glu 13	-	expression tag
Thr 14	-	expression tag
Gly 15	-	expression tag
Thr 16	-	expression tag
Pro 1140	Glu 1140	conflict
Pro 1141	Leu 1141	conflict
Ser 1388	Trp 1388	conflict
Gly 1389	Pro 1389	conflict
Gly 1390	Trp 1390	conflict
Ile 1392	Val 1392	conflict
Pro 1393	-	expression tag
Glu 1394	-	expression tag
Ala 1395	-	expression tag
Pro 1396	-	expression tag
Arg 1397	-	expression tag
Asp 1398	-	expression tag
Gly 1399	-	expression tag
Gln 1400	-	expression tag
Ala 1401	-	expression tag
Tyr 1402	-	expression tag
Val 1403	-	expression tag
Arg 1404	-	expression tag
Lys 1405	-	expression tag
Asp 1406	-	expression tag
Gly 1407	-	expression tag
Glu 1408	-	expression tag
Trp 1409	-	expression tag
Val 1410	-	expression tag
Leu 1411	-	expression tag
Leu 1412	-	expression tag
Ser 1413	-	expression tag
Thr 1414	-	expression tag
Phe 1415	-	expression tag
Leu 1416	-	expression tag
Val 1417	-	expression tag
Pro 1418	-	expression tag
Arg 1419	-	expression tag
Gly 1420	-	expression tag
Ser 1421	-	expression tag
Gly 1422	-	expression tag
Gly 1423	-	expression tag
Ser 1424	-	expression tag
Gly 1425	-	expression tag
Gly 1426	-	expression tag
Ser 1427	-	expression tag
Gly 1428	-	expression tag
Leu 1429	-	expression tag
Asn 1430	-	expression tag
Asp 1431	-	expression tag
Ile 1432	-	expression tag
Phe 1433	-	expression tag
Glu 1434	-	expression tag
Ala 1435	-	expression tag
Gln 1436	-	expression tag
Lys 1437	-	expression tag
Ile 1438	-	expression tag
Glu 1439	-	expression tag
Trp 1440	-	expression tag
His 1441	-	expression tag
Glu 1442	-	expression tag
Gly 1443	-	expression tag
Gly 1444	-	expression tag
Ser 1445	-	expression tag
His 1446	-	expression tag
His 1447	-	expression tag
His 1448	-	expression tag
His 1449	-	expression tag
His 1450	-	expression tag
His 1451	-	expression tag
His 1452	-	expression tag
His 1453	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	3
	Total formula weight	484863.4
Branched	Number of molecules	27
	Total formula weight	12431.7
Non-Polymers*	Number of molecules	30
	Total formula weight	6636.2
All*	Total formula weight	503931.3

*Water molecules are not included.