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Structure of the human coronavirus CCoV-HuPn-2018 spike glycoprotein with domain 0 in the swung out conformation
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1469 | 161621.1 | 3 | UniProt (A0A8E6CMP0) Pfam (PF01600) Pfam (PF19209) Pfam (PF01601) In PDB | unidentified human coronavirus | S glycoprotein,E2,Peplomer protein |
2 | a, c, D, E, F... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
3 | b, d, J, L, S... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
4 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 30 | Chemie (NAG) |
Sequence modifications
A, B, C: 17 - 1392 (UniProt: A0A8E6CMP0)
PDB | External Database | Details |
---|---|---|
Met -15 | - | initiating methionine |
Gly -14 | - | expression tag |
Ile -13 | - | expression tag |
Leu -12 | - | expression tag |
Pro -11 | - | expression tag |
Ser -10 | - | expression tag |
Pro -9 | - | expression tag |
Gly -8 | - | expression tag |
Met -7 | - | expression tag |
Pro -6 | - | expression tag |
Ala -5 | - | expression tag |
Leu -4 | - | expression tag |
Leu -3 | - | expression tag |
Ser -2 | - | expression tag |
Leu -1 | - | expression tag |
Val 0 | - | expression tag |
Ser 1 | - | expression tag |
Leu 2 | - | expression tag |
Leu 3 | - | expression tag |
Ser 4 | - | expression tag |
Val 5 | - | expression tag |
Leu 6 | - | expression tag |
Leu 7 | - | expression tag |
Met 8 | - | expression tag |
Gly 9 | - | expression tag |
Cys 10 | - | expression tag |
Val 11 | - | expression tag |
Ala 12 | - | expression tag |
Glu 13 | - | expression tag |
Thr 14 | - | expression tag |
Gly 15 | - | expression tag |
Thr 16 | - | expression tag |
Pro 1140 | Glu 1140 | conflict |
Pro 1141 | Leu 1141 | conflict |
Ser 1388 | Trp 1388 | conflict |
Gly 1389 | Pro 1389 | conflict |
Gly 1390 | Trp 1390 | conflict |
Ile 1392 | Val 1392 | conflict |
Pro 1393 | - | expression tag |
Glu 1394 | - | expression tag |
Ala 1395 | - | expression tag |
Pro 1396 | - | expression tag |
Arg 1397 | - | expression tag |
Asp 1398 | - | expression tag |
Gly 1399 | - | expression tag |
Gln 1400 | - | expression tag |
Ala 1401 | - | expression tag |
Tyr 1402 | - | expression tag |
Val 1403 | - | expression tag |
Arg 1404 | - | expression tag |
Lys 1405 | - | expression tag |
Asp 1406 | - | expression tag |
Gly 1407 | - | expression tag |
Glu 1408 | - | expression tag |
Trp 1409 | - | expression tag |
Val 1410 | - | expression tag |
Leu 1411 | - | expression tag |
Leu 1412 | - | expression tag |
Ser 1413 | - | expression tag |
Thr 1414 | - | expression tag |
Phe 1415 | - | expression tag |
Leu 1416 | - | expression tag |
Val 1417 | - | expression tag |
Pro 1418 | - | expression tag |
Arg 1419 | - | expression tag |
Gly 1420 | - | expression tag |
Ser 1421 | - | expression tag |
Gly 1422 | - | expression tag |
Gly 1423 | - | expression tag |
Ser 1424 | - | expression tag |
Gly 1425 | - | expression tag |
Gly 1426 | - | expression tag |
Ser 1427 | - | expression tag |
Gly 1428 | - | expression tag |
Leu 1429 | - | expression tag |
Asn 1430 | - | expression tag |
Asp 1431 | - | expression tag |
Ile 1432 | - | expression tag |
Phe 1433 | - | expression tag |
Glu 1434 | - | expression tag |
Ala 1435 | - | expression tag |
Gln 1436 | - | expression tag |
Lys 1437 | - | expression tag |
Ile 1438 | - | expression tag |
Glu 1439 | - | expression tag |
Trp 1440 | - | expression tag |
His 1441 | - | expression tag |
Glu 1442 | - | expression tag |
Gly 1443 | - | expression tag |
Gly 1444 | - | expression tag |
Ser 1445 | - | expression tag |
His 1446 | - | expression tag |
His 1447 | - | expression tag |
His 1448 | - | expression tag |
His 1449 | - | expression tag |
His 1450 | - | expression tag |
His 1451 | - | expression tag |
His 1452 | - | expression tag |
His 1453 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 484863.4 | |
Branched | Number of molecules | 27 |
Total formula weight | 12431.7 | |
Non-Polymers* | Number of molecules | 30 |
Total formula weight | 6636.2 | |
All* | Total formula weight | 503931.3 |