7UQ3
JmjC domain-containing protein 5 (JMJD5) in complex with Mn and (S)-2-(1-hydroxy-2,5-dioxopyrrolidin-3-yl)acetic acid
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Bifunctional peptidase and arginyl-hydroxylase JMJD5 | polymer | 256 | 29733.5 | 1 | UniProt (Q8N371) Pfam (PF13621) In PDB | Homo sapiens (human) | JmjC domain-containing protein 5,Jumonji C domain-containing protein 5,L-arginine (3R)-hydroxylase KDM8 |
2 | A | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
3 | A | [(3S)-1-hydroxy-2,5-dioxopyrrolidin-3-yl]acetic acid | non-polymer | 173.1 | 1 | Chemie (O2U) | |||
4 | A | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
5 | water | water | 18.0 | 290 | Chemie (HOH) |
Sequence modifications
A: 183 - 416 (UniProt: Q8N371)
PDB | External Database | Details |
---|---|---|
Met 161 | - | initiating methionine |
His 162 | - | expression tag |
His 163 | - | expression tag |
His 164 | - | expression tag |
His 165 | - | expression tag |
His 166 | - | expression tag |
His 167 | - | expression tag |
Ser 168 | - | expression tag |
Ser 169 | - | expression tag |
Gly 170 | - | expression tag |
Val 171 | - | expression tag |
Asp 172 | - | expression tag |
Leu 173 | - | expression tag |
Gly 174 | - | expression tag |
Thr 175 | - | expression tag |
Glu 176 | - | expression tag |
Asn 177 | - | expression tag |
Leu 178 | - | expression tag |
Tyr 179 | - | expression tag |
Phe 180 | - | expression tag |
Gln 181 | - | expression tag |
Ser 182 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 29733.5 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 412.2 | |
All* | Total formula weight | 30145.8 |