7UAQ
Structure of the SARS-CoV-2 NTD in complex with C1520, local refinement
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Spike glycoprotein | polymer | 1256 | 139344.4 | 1 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2 2019-nCoV) | S glycoprotein,E2,Peplomer protein |
2 | H | C1520 Fab Heavy Chain | polymer | 233 | 25179.1 | 1 | Homo sapiens (Human) | ||
3 | L | C1520 Fab Light Chain | polymer | 217 | 23111.5 | 1 | Homo sapiens (Human) | ||
4 | B, C, D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
5 | A, L | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) |
Sequence modifications
A: 1 - 1210 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
- | Arg 682 | deletion |
- | Arg 683 | deletion |
- | Arg 685 | deletion |
Pro 814 | Phe 817 | conflict |
Pro 889 | Ala 892 | conflict |
Pro 896 | Ala 899 | conflict |
Pro 939 | Ala 942 | conflict |
Pro 983 | Lys 986 | conflict |
Pro 984 | Val 987 | conflict |
Ser 1211 | - | expression tag |
Gly 1212 | - | expression tag |
Arg 1213 | - | expression tag |
Leu 1214 | - | expression tag |
Val 1215 | - | expression tag |
Pro 1216 | - | expression tag |
Arg 1217 | - | expression tag |
Gly 1218 | - | expression tag |
Ser 1219 | - | expression tag |
Pro 1220 | - | expression tag |
Gly 1221 | - | expression tag |
Ser 1222 | - | expression tag |
Gly 1223 | - | expression tag |
Tyr 1224 | - | expression tag |
Ile 1225 | - | expression tag |
Pro 1226 | - | expression tag |
Glu 1227 | - | expression tag |
Ala 1228 | - | expression tag |
Pro 1229 | - | expression tag |
Arg 1230 | - | expression tag |
Asp 1231 | - | expression tag |
Gly 1232 | - | expression tag |
Gln 1233 | - | expression tag |
Ala 1234 | - | expression tag |
Tyr 1235 | - | expression tag |
Val 1236 | - | expression tag |
Arg 1237 | - | expression tag |
Lys 1238 | - | expression tag |
Asp 1239 | - | expression tag |
Gly 1240 | - | expression tag |
Glu 1241 | - | expression tag |
Trp 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Leu 1245 | - | expression tag |
Ser 1246 | - | expression tag |
Thr 1247 | - | expression tag |
Phe 1248 | - | expression tag |
Leu 1249 | - | expression tag |
Gly 1250 | - | expression tag |
His 1251 | - | expression tag |
His 1252 | - | expression tag |
His 1253 | - | expression tag |
His 1254 | - | expression tag |
His 1255 | - | expression tag |
His 1256 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 187635.0 | |
Branched | Number of molecules | 3 |
Total formula weight | 1273.2 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 884.8 | |
All* | Total formula weight | 189793.0 |