7UAP

Structure of the SARS-CoV-2 S 6P trimer in complex with the neutralizing antibody Fab fragment, C1520

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C	Spike glycoprotein	polymer	1256	139344.4	3	UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB	Severe acute respiratory syndrome coronavirus 2	S glycoprotein,E2,Peplomer protein
2	H, M, O	C1520 Fab Heavy Chain	polymer	233	25179.1	3		Homo sapiens (Human)
3	L, N, P	C1520 Fab Light Chain	polymer	217	23111.5	3		Homo sapiens (Human)
4	D, E, F, G, I...	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	12	In PDB GlyTouCan (G42666HT)
5	A, C, L, N, P...	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	35	Chemie (NAG)

Sequence modifications

A, B, C: 1 - 1213 (UniProt: P0DTC2)

PDB	External Database	Details
-	Arg 682	deletion
-	Arg 683	deletion
-	Arg 685	deletion
Pro 817	Phe 817	conflict
Pro 892	Ala 892	conflict
Pro 899	Ala 899	conflict
Pro 942	Ala 942	conflict
Pro 986	Lys 986	conflict
Pro 987	Val 987	conflict
Ser 1214	-	expression tag
Gly 1215	-	expression tag
Arg 1216	-	expression tag
Leu 1217	-	expression tag
Val 1218	-	expression tag
Pro 1219	-	expression tag
Arg 1220	-	expression tag
Gly 1221	-	expression tag
Ser 1222	-	expression tag
Pro 1223	-	expression tag
Gly 1224	-	expression tag
Ser 1225	-	expression tag
Gly 1226	-	expression tag
Tyr 1227	-	expression tag
Ile 1228	-	expression tag
Pro 1229	-	expression tag
Glu 1230	-	expression tag
Ala 1231	-	expression tag
Pro 1232	-	expression tag
Arg 1233	-	expression tag
Asp 1234	-	expression tag
Gly 1235	-	expression tag
Gln 1236	-	expression tag
Ala 1237	-	expression tag
Tyr 1238	-	expression tag
Val 1239	-	expression tag
Arg 1240	-	expression tag
Lys 1241	-	expression tag
Asp 1242	-	expression tag
Gly 1243	-	expression tag
Glu 1244	-	expression tag
Trp 1245	-	expression tag
Val 1246	-	expression tag
Leu 1247	-	expression tag
Leu 1248	-	expression tag
Ser 1249	-	expression tag
Thr 1250	-	expression tag
Phe 1251	-	expression tag
Leu 1252	-	expression tag
Gly 1253	-	expression tag
His 1254	-	expression tag
His 1255	-	expression tag
His 1256	-	expression tag
His 1257	-	expression tag
His 1258	-	expression tag
His 1259	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	9
	Total formula weight	562904.9
Branched	Number of molecules	12
	Total formula weight	5092.8
Non-Polymers*	Number of molecules	35
	Total formula weight	7742.3
All*	Total formula weight	575740.0

*Water molecules are not included.