7U3D
Structure of S. venezuelae GlgX-c-di-GMP-acarbose complex (4.6)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, F, B, C) | Glycogen debranching enzyme GlgX | polymer | 709 | 80167.2 | 4 | UniProt (A0A5P2ALW6) Pfam (PF02922) Pfam (PF00128) | Streptomyces venezuelae | |
| 2 | E, F, G, H (D, H, I, J) | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | branched | 645.6 | 4 | In PDB BIRD (PRD_900007) GlyTouCan (G66431MI) | |||
| 3 | I, J, K, L (A, F, B, C) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 4 | Chemie (C2E) | |||
| 4 | M, N, O, P (A, F, B, C) | water | water | 18.0 | 1016 | Chemie (HOH) |
Sequence modifications
A, F, B, C: 1 - 706 (UniProt: A0A5P2ALW6)
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
| Val 103 | Ile 103 | conflict |
| Arg 192 | Lys 192 | conflict |
| Ala 296 | Ser 296 | conflict |
| Asp 297 | Asn 297 | conflict |
| Met 303 | Thr 303 | conflict |
| Gln 682 | Glu 682 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 320668.9 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 2582.4 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 2761.6 | |
| All* | Total formula weight | 326013.0 |
