7U3B
Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (C, D, E, F, G...) | Glycogen debranching enzyme GlgX | polymer | 709 | 80167.2 | 8 | UniProt (A0A5P2ALW6) Pfam (PF02922) Pfam (PF00128) | Streptomyces venezuelae | |
| 2 | AA, I, K, O, R... (J, C, D, E, F...) | 4-O-(4,6-dideoxy-4-{[(1S,2S,3S,4R,5S)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl]amino}-alpha-D-glucopyranosyl)-beta-D-glucopyranose | non-polymer | 485.5 | 8 | Chemie (A16) | |||
| 3 | BA, J, N, Q, S... (J, C, D, E, F...) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 8 | Chemie (C2E) | |||
| 4 | L, M, P, W (D, E, H) | PHOSPHATE ION | non-polymer | 95.0 | 4 | Chemie (PO4) | |||
| 5 | CA, DA, EA, FA, GA (C, E, F, H, I) | water | water | 18.0 | 20 | Chemie (HOH) |
Sequence modifications
C, D, E, F, G, H, I, J: 1 - 706 (UniProt: A0A5P2ALW6)
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
| Val 103 | Ile 103 | conflict |
| Arg 192 | Lys 192 | conflict |
| Ala 296 | Ser 296 | conflict |
| Asp 297 | Asn 297 | conflict |
| Met 303 | Thr 303 | conflict |
| Gln 682 | Glu 682 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 641337.9 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 9787.0 | |
| All* | Total formula weight | 651124.9 |
