7U3B
Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-12 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 1.00 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 109.839, 185.588, 184.671 |
Unit cell angles | 90.00, 98.08, 90.00 |
Refinement procedure
Resolution | 48.500 - 3.600 |
R-factor | 0.2383 |
Rwork | 0.237 |
R-free | 0.30750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7u3a |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.500 | 3.780 |
High resolution limit [Å] | 3.600 | 3.600 |
Rpim | 0.170 | 0.517 |
Number of reflections | 83324 | 5752 |
<I/σ(I)> | 5.5 | 1.3 |
Completeness [%] | 98.2 | |
Redundancy | 1.7 | |
CC(1/2) | 0.923 | 0.667 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 50% MPD, 0.1 M Tris pH 8.5 and 200 mM ammonium phosphate monobasic |