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7U3B

Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-01-12
DetectorDECTRIS PILATUS3 2M
Wavelength(s)1.00
Spacegroup nameP 1 21 1
Unit cell lengths109.839, 185.588, 184.671
Unit cell angles90.00, 98.08, 90.00
Refinement procedure
Resolution48.500 - 3.600
R-factor0.2383
Rwork0.237
R-free0.30750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7u3a
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.5003.780
High resolution limit [Å]3.6003.600
Rpim0.1700.517
Number of reflections833245752
<I/σ(I)>5.51.3
Completeness [%]98.2
Redundancy1.7
CC(1/2)0.9230.667
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29850% MPD, 0.1 M Tris pH 8.5 and 200 mM ammonium phosphate monobasic

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PDB entries from 2024-07-03

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