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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7U0H

State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1125S rRNApolymer33961097493.91GenBank (2211412803)Saccharomyces cerevisiae BY4741
225.8S rRNApolymer15850682.91GenBank (1780004485)Saccharomyces cerevisiae BY4741
36ITS2 rRNApolymer8727786.31Saccharomyces cerevisiae BY4741
4A60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiae BY4741L5,Large ribosomal subunit protein uL2-A,RP8,YL6
5B60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
6C60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae BY4741L2,Large ribosomal subunit protein uL4-A,RP2,YL2
7E60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae BY4741L17,Large ribosomal subunit protein eL6-A,RP18,YL16
8F60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741L6,Large ribosomal subunit protein uL30-A,RP11,YL8
9G60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
10H60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae BY4741L8,Large ribosomal subunit protein uL6-A,RP24,YL11
11KProteasome-interacting protein CIC1polymer37642596.71UniProt (P38779)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae BY4741Core interacting component 1
12L60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL13-A
13M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL14-A
14N60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae BY4741L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
15O60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae BY4741L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
16P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae BY4741L20A,Large ribosomal subunit protein uL22-A,YL17
17Q60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL18-A,RP28
18R60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae BY4741L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
19S60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae BY4741L18a,Large ribosomal subunit protein eL20-A
20T60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL21-A
21U60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae BY4741L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
22V60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae BY4741L17a,Large ribosomal subunit protein uL14-A,YL32
23WRibosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Saccharomyces cerevisiae BY4741mRNA turnover protein 4
24X60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
25Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae BY4741L33,Large ribosomal subunit protein uL24-A,YL33
26Z60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL27-A
27a60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae BY4741L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
28bNucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Saccharomyces cerevisiae BY4741
29c60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741L32,Large ribosomal subunit protein eL30,RP73,YL38
30d60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae BY4741L34,Large ribosomal subunit protein eL31-A,YL28
31e60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL32
32f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae BY4741L37,Large ribosomal subunit protein eL33-A,RP47,YL37
33g60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL34-A
34h60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL29-A
35i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae BY4741L39,Large ribosomal subunit protein eL36-A,YL39
36j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae BY4741L43,Large ribosomal subunit protein eL37-A,YL35,YP55
37k60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL38
38mNucleolar GTP-binding protein 2polymer91003.11UniProt (by SIFTS) (P53742)
In PDB		Saccharomyces cerevisiae BY4741
39nPescadillo homologpolymer60569984.11UniProt (P53261)
Pfam (PF06732)
Pfam (PF16589)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 7,Ribosomal RNA-processing protein 13
40oRibosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 15
41p60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae BY4741L37a,Large ribosomal subunit protein eL43-A,YL35
42qRibosome biogenesis protein NOP53polymer45552667.81UniProt (Q12080)
Pfam (PF07767)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 53
43rRibosome biogenesis protein NSA2polymer26129786.81UniProt (A6ZR80)
Pfam (PF01201)
UniProt (by SIFTS) (P40078)
In PDB		Saccharomyces cerevisiae BY4741NOP7-associated protein 2
44sNuclear GTP-binding protein NUG1polymer52057798.71UniProt (P40010)
Pfam (PF08701)
Pfam (PF01926)
In PDB		Saccharomyces cerevisiae BY4741Nuclear GTPase 1
45tRibosome biogenesis protein RLP7polymer32236621.11UniProt (P40693)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741Ribosomal protein L7-like
46uRibosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae BY4741Ribosomal protein L24-like
47w27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferasepolymer84196656.21UniProt (P25582)
Pfam (PF01728)
Pfam (PF11861)
Pfam (PF07780)
In PDB		Saccharomyces cerevisiae BY47412'-O-ribose RNA methyltransferase SPB1,AdoMet-dependent rRNA methyltransferase SPB1,S-adenosyl-L-methionine-dependent methyltransferase,Suppressor of PAB1 protein 1
48yEukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae BY4741eIF-6
49zUPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
In PDB		Saccharomyces cerevisiae BY4741
50bMAGNESIUM IONnon-polymer24.31Chemie (MG)
51p, u, g, jZINC IONnon-polymer65.44Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains49
Total formula weight2356923.8
Non-Polymers*Number of molecules5
Total formula weight285.9
All*Total formula weight2357209.7
*Water molecules are not included.

224004

PDB entries from 2024-08-21

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