7U06

Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite structure)

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, M (C, c)	Trafficking protein particle complex II-specific subunit 65	polymer	560	63434.5	2	UniProt (P32893) Pfam (PF12735)	Saccharomyces cerevisiae (baker's yeast)	TRAPP II-specific subunit 65,Beta-glucan synthesis-associated protein TRS65,Killer toxin-resistance protein 11,Transport protein particle 65 kDa subunit
2	B, N (D, d)	TRAPP-associated protein TCA17	polymer	152	17371.0	2	UniProt (P32613) Pfam (PF04628)	Saccharomyces cerevisiae (baker's yeast)	17 kDa TRAPP complex-associated protein
3	C, O (E, e)	Trafficking protein particle complex subunit 33	polymer	268	30786.2	2	UniProt (Q99394) Pfam (PF04051)	Saccharomyces cerevisiae (baker's yeast)	TRAPP subunit 33,Transport protein particle 33 kDa subunit
4	D, G, P, S (F, I, f, i)	Trafficking protein particle complex subunit BET3	polymer	193	22152.4	4	UniProt (P36149) Pfam (PF04051)	Saccharomyces cerevisiae (baker's yeast)	TRAPP subunit BET3,Transport protein particle 22 kDa subunit
5	E, Q (G, g)	Trafficking protein particle complex subunit BET5	polymer	159	18453.9	2	UniProt (Q03630) Pfam (PF04099)	Saccharomyces cerevisiae (baker's yeast)	TRAPP subunit BET5,Transport protein particle 18 kDa subunit
6	F, R (H, h)	Trafficking protein particle complex subunit 23	polymer	219	24889.3	2	UniProt (Q03784) Pfam (PF04099)	Saccharomyces cerevisiae (baker's yeast)	TRAPP subunit 23,Transport protein particle 23 kDa subunit
7	H, T (J, j)	Trafficking protein particle complex subunit 31	polymer	283	31755.7	2	UniProt (Q03337) Pfam (PF04051)	Saccharomyces cerevisiae (baker's yeast)	TRAPP subunit 31,Transport protein particle 31 kDa subunit
8	I, U (K, k)	Trafficking protein particle complex subunit 20	polymer	175	19721.2	2	UniProt (P38334) Pfam (PF04628)	Saccharomyces cerevisiae (baker's yeast)	TRAPP subunit 20,Transport protein particle 20 kDa subunit
9	J (l)	GTP-binding protein YPT32/YPT11	polymer	227	25309.1	1	UniProt (P51996) Pfam (PF00071)	Saccharomyces cerevisiae (baker's yeast)	Rab GTPase YPT32
10	K, V (B, b)	Trafficking protein particle complex II-specific subunit 130	polymer	1104	128424.3	2	UniProt (Q03660) Pfam (PF12584)	Saccharomyces cerevisiae (baker's yeast)	TRAPP II-specific subunit 130,Transport protein particle 130 kDa subunit
11	L, W (A, a)	Trafficking protein particle complex II-specific subunit 120	polymer	1289	147823.3	2	UniProt (Q04183) Pfam (PF08626)	Saccharomyces cerevisiae (baker's yeast)	TRAPP II-specific subunit 120,Transport protein particle 120 kDa subunit
12	X, Y (M, m)	Trafficking protein particle complex II-specific subunit 130	polymer	293	24953.6	2		Saccharomyces cerevisiae (Baker's yeast)
13	AA, Z (n, N)	Trafficking protein particle complex II-specific subunit 65	polymer	210	17890.0	2		Saccharomyces cerevisiae (Baker's yeast)
14	BA, CA, DA, EA (F, I, f, i)	PALMITIC ACID	non-polymer		256.4	4	Chemie (PLM)

Sequence modifications

l: 1 - 220 (UniProt: P51996)

PDB	External Database	Details
His 221	-	expression tag
His 222	-	expression tag
His 223	-	expression tag
His 224	-	expression tag
His 225	-	expression tag
His 226	-	expression tag
His 227	-	expression tag

B, b: 1 - 1102 (UniProt: Q03660)

PDB	External Database	Details
Ala 1103	-	expression tag
Ala 1104	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	27
	Total formula weight	1164924.5
Non-Polymers*	Number of molecules	4
	Total formula weight	1025.7
All*	Total formula weight	1165950.2

*Water molecules are not included.