7U06
Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite structure)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | C, c | Trafficking protein particle complex II-specific subunit 65 | polymer | 560 | 63434.5 | 2 | UniProt (P32893) Pfam (PF12735) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP II-specific subunit 65,Beta-glucan synthesis-associated protein TRS65,Killer toxin-resistance protein 11,Transport protein particle 65 kDa subunit |
2 | D, d | TRAPP-associated protein TCA17 | polymer | 152 | 17371.0 | 2 | UniProt (P32613) Pfam (PF04628) In PDB | Saccharomyces cerevisiae (baker's yeast) | 17 kDa TRAPP complex-associated protein |
3 | E, e | Trafficking protein particle complex subunit 33 | polymer | 268 | 30786.2 | 2 | UniProt (Q99394) Pfam (PF04051) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP subunit 33,Transport protein particle 33 kDa subunit |
4 | F, I, f, i | Trafficking protein particle complex subunit BET3 | polymer | 193 | 22152.4 | 4 | UniProt (P36149) Pfam (PF04051) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP subunit BET3,Transport protein particle 22 kDa subunit |
5 | G, g | Trafficking protein particle complex subunit BET5 | polymer | 159 | 18453.9 | 2 | UniProt (Q03630) Pfam (PF04099) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP subunit BET5,Transport protein particle 18 kDa subunit |
6 | H, h | Trafficking protein particle complex subunit 23 | polymer | 219 | 24889.3 | 2 | UniProt (Q03784) Pfam (PF04099) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP subunit 23,Transport protein particle 23 kDa subunit |
7 | J, j | Trafficking protein particle complex subunit 31 | polymer | 283 | 31755.7 | 2 | UniProt (Q03337) Pfam (PF04051) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP subunit 31,Transport protein particle 31 kDa subunit |
8 | K, k | Trafficking protein particle complex subunit 20 | polymer | 175 | 19721.2 | 2 | UniProt (P38334) Pfam (PF04628) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP subunit 20,Transport protein particle 20 kDa subunit |
9 | l | GTP-binding protein YPT32/YPT11 | polymer | 227 | 25309.1 | 1 | UniProt (P51996) Pfam (PF00071) In PDB | Saccharomyces cerevisiae (baker's yeast) | Rab GTPase YPT32 |
10 | B, b | Trafficking protein particle complex II-specific subunit 130 | polymer | 1104 | 128424.3 | 2 | UniProt (Q03660) Pfam (PF12584) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP II-specific subunit 130,Transport protein particle 130 kDa subunit |
11 | A, a | Trafficking protein particle complex II-specific subunit 120 | polymer | 1289 | 147823.3 | 2 | UniProt (Q04183) Pfam (PF08626) In PDB | Saccharomyces cerevisiae (baker's yeast) | TRAPP II-specific subunit 120,Transport protein particle 120 kDa subunit |
12 | M, m | Trafficking protein particle complex II-specific subunit 130 | polymer | 293 | 24953.6 | 2 | Saccharomyces cerevisiae (Baker's yeast) | ||
13 | n, N | Trafficking protein particle complex II-specific subunit 65 | polymer | 210 | 17890.0 | 2 | Saccharomyces cerevisiae (Baker's yeast) | ||
14 | F, I, f, i | PALMITIC ACID | non-polymer | 256.4 | 4 | Chemie (PLM) |
Sequence modifications
l: 1 - 220 (UniProt: P51996)
B, b: 1 - 1102 (UniProt: Q03660)
PDB | External Database | Details |
---|---|---|
His 221 | - | expression tag |
His 222 | - | expression tag |
His 223 | - | expression tag |
His 224 | - | expression tag |
His 225 | - | expression tag |
His 226 | - | expression tag |
His 227 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 1103 | - | expression tag |
Ala 1104 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 27 |
Total formula weight | 1164924.5 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1025.7 | |
All* | Total formula weight | 1165950.2 |